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Report for CCDS36933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36933.1 Public Mus musculus 14 Rabggta 23 108 98 CCDS HistoryNCBI Gene:56187Re-query CCDS DB by CCDS ID:36933.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163889.2 ENSMUSP00000128668.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163889.2Link to Ensembl Protein Viewer:ENSMUSP00000128668.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163889Re-query CCDS DB by Protein ID:ENSMUSP00000128668
Original member Current member EBI ENSMUST00000169237.7 ENSMUSP00000133032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169237.7Link to Ensembl Protein Viewer:ENSMUSP00000133032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169237Re-query CCDS DB by Protein ID:ENSMUSP00000133032
Original member Current member EBI ENSMUST00000227061.1 ENSMUSP00000154725.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227061.1Link to Ensembl Protein Viewer:ENSMUSP00000154725.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227061Re-query CCDS DB by Protein ID:ENSMUSP00000154725
Original member Current member NCBI NM_001360387.1 NP_001347316.1 Accepted alive Link to Nucleotide Sequence:NM_001360387.1Link to Protein Sequence:NP_001347316.1Re-query CCDS DB by Nucleotide ID:NM_001360387Re-query CCDS DB by Protein ID:NP_001347316Link to BLAST:NP_001347316.1
Original member Current member NCBI NM_001360388.1 NP_001347317.1 Accepted alive Link to Nucleotide Sequence:NM_001360388.1Link to Protein Sequence:NP_001347317.1Re-query CCDS DB by Nucleotide ID:NM_001360388Re-query CCDS DB by Protein ID:NP_001347317Link to BLAST:NP_001347317.1
Original member Current member NCBI NM_019519.3 NP_062392.1 Accepted alive Link to Nucleotide Sequence:NM_019519.3Link to Protein Sequence:NP_062392.1Re-query CCDS DB by Nucleotide ID:NM_019519Re-query CCDS DB by Protein ID:NP_062392Link to BLAST:NP_062392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347316.1 567 Q9JHK4-1 567 100% 0 0
NP_001347317.1 567 Q9JHK4-1 567 100% 0 0
NP_062392.1 567 Q9JHK4-1 567 100% 0 0

Chromosomal Locations for CCDS 36933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55716390 55716538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55717168 55717255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55717504 55717617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55718446 55718562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55718663 55718751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55718864 55718952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55719091 55719142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55719240 55719345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55719430 55719531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55719624 55719706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55719796 55719879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55720304 55720507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55720776 55720963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55721136 55721260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55721595 55721705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55721844 55721846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCATGGGCGCCTGAAGGTGAAGACGTCCGAAGAGCAGGCAGAGGCCAAAAGGCTAGAGCGGGAACAGA
AGCTAAAGCTCTACCAGTCAGCCACTCAAGCTGTCTTCCAGAAGCGGGAGGCAGGCGAGCTGGATGAATC
CGTCCTAGAACTGACAAGCCAGATTCTGGGAGCCAACCCTGATTTTGCCACCCTCTGGAACTGTCGCAGA
GAAGTGCTCCAGCAGCTAGAAACCCAGAAGTCCCCTGAGGAGTTGGCTGCTCTTGTGAAGGCAGAACTAG
GCTTCCTTGAGAGCTGTCTGCGTGTGAACCCTAAGTCCTATGGCACTTGGCACCACCGCTGCTGGCTGCT
GAGTCGCCTGCCTGAGCCCAACTGGGCCCGGGAGCTGGAGCTGTGCGCTCGCTTCCTCGAGGCCGATGAG
CGGAACTTTCATTGCTGGGACTATCGGCGATTTGTAGCTGCACAGGCTGCTGTCGCGCCTGCAGAGGAAC
TAGCCTTCACTGACAGCCTCATCACCCGGAACTTCTCCAACTATTCTTCCTGGCATTATCGCTCCTGCCT
CTTGCCCCAGCTGCACCCCCAGCCAGACTCTGGCCCCCAGGGACGGCTCCCTGAAAATGTACTGCTGAGA
GAGCTGGAGTTGGTGCAGAATGCCTTCTTTACTGACCCCAATGATCAGAGTGCCTGGTTCTATCACCGCT
GGCTCCTGGGGCGGGCGGAGCCCCACGATGTTCTGTGCTGCCTGCATGTGAGCCGGGAAGAGGCCTGTCT
GTCAGTCTGCTTTTCTCGTCCCCTGATAGTGGGCTCCAAGATGGGGACCTTGCTACTCACGGTTGACGAG
GCACCTTTGAGTGTGGAATGGAGGACTCCAGATGGCAGGAACCGGCCCAGCCATGTCTGGCTCTGTGACC
TGCCTGCTGCCTCTCTCAATGACCACTTGCCCCAGCACACGTTTCGTGTCATCTGGACAGGAAGCGATAC
CCAGAAGGAGTGTGTGCTTTTAAAAGGTCACCAGGAGTGCTGGTGCCGAGACTCAGCCACTGATGAACAG
TTGTTCAGGTGTGAGCTGTCCGTGGAGAAGTCCACAGTGCTACAGTCCGAGCTTGAGTCCTGTAAGGAGC
TGCAGGAACTGGAGCCTGAGAATAAATGGTGCCTGCTGACCATCATCCTCCTGATGAGGGCACTGGACCC
CCTCCTCTACGAGAAAGAAACACTGGAGTACTTCAGTACCCTCAAAGCTGTGGACCCGATGAGAGCAGCC
TACTTGGACGACCTGCGCAGCAAGTTCTTGGTGGAAAACAGTGTTCTCAAGATGGAGTATGCTGACGTGC
GTGTGCTGCACCTGGCTCACAAGGATCTCACAGTGCTCTGCCATTTGGAACAACTGCTCTTGGTCACTCA
TCTTGACCTGTCCCATAATCGTCTCCGAGCCTTGCCCCCAGCCCTGGCTGCTCTGCGCTGTCTCGAGGTG
TTGCAGGCCAGTGATAATGTCCTGGAGAACTTGGACGGCGTGGCTAACCTTCCCCGGCTGCGGGAGCTGT
TACTATGTAATAACCGCCTCCAGCAGTCTGCTGCACTTCAGACTCTTGCCTCCTGCCCCAGGCTAGTCTT
CCTCAACCTGCAGGGCAACTCGCTGTGCCAAGAAGAGGGCATCCGGGAGCGTTTGGCTGAGATGCTACCG
TCCGTCAGCAGCATCCTCACCTAG

Translation (567 aa):
MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANPDFATLWNCRR
EVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE
RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLR
ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCLHVSREEACLSVCFSRPLIVGSKMGTLLLTVDE
APLSVEWRTPDGRNRPSHVWLCDLPAASLNDHLPQHTFRVIWTGSDTQKECVLLKGHQECWCRDSATDEQ
LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLEYFSTLKAVDPMRAA
YLDDLRSKFLVENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEV
LQASDNVLENLDGVANLPRLRELLLCNNRLQQSAALQTLASCPRLVFLNLQGNSLCQEEGIRERLAEMLP
SVSSILT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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