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Report for CCDS24993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24993.1 Public Mus musculus 11 Camkk1 23 108 98 CCDS HistoryNCBI Gene:55984Re-query CCDS DB by CCDS ID:24993.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092937.12 ENSMUSP00000090613.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092937.12Link to Ensembl Protein Viewer:ENSMUSP00000090613.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000092937Re-query CCDS DB by Protein ID:ENSMUSP00000090613
Original member Current member NCBI NM_001362841.1 NP_001349770.1 Accepted alive Link to Nucleotide Sequence:NM_001362841.1Link to Protein Sequence:NP_001349770.1Re-query CCDS DB by Nucleotide ID:NM_001362841Re-query CCDS DB by Protein ID:NP_001349770Link to BLAST:NP_001349770.1
Original member Current member NCBI NM_018883.3 NP_061371.2 Accepted alive Link to Nucleotide Sequence:NM_018883.3Link to Protein Sequence:NP_061371.2Re-query CCDS DB by Nucleotide ID:NM_018883Re-query CCDS DB by Protein ID:NP_061371Link to BLAST:NP_061371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349770.1 505 Q8VBY2 505 100% 0 0
NP_061371.2 505 Q8VBY2 505 100% 0 0

Chromosomal Locations for CCDS 24993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73025578 73025937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73026585 73026632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73027015 73027068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73027430 73027481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73027692 73027825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73028229 73028265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73029142 73029163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73030803 73030891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73033759 73033958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73036474 73036527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73037195 73037268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73037538 73037625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73037849 73037977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73038412 73038515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73040221 73040293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGAGAGTGGCCCAGCCGTCTGCTGCCAAGACCCTCGTGCAGAGCTGGTGGATCGGGTGGCGGCCATCA
ATGTGGCCCACTTGGAAGAAGCAGATGAGGGTCCAGAGCCTGCCAGGAATGGTGTGGATCCTCCACCCCG
GGCCAGAGCTGCCTCCGTGATCCCTGGCAGTGCTTCAAGACCCACTCCAGTGCGCCCCAGCCTCTCGGCT
AGAAAGTTCTCCCTGCAGGAACGACCAGCTGGAAGCTGTCTGGGGGCTCAAGTTGGGCCTTACTCTACAG
GACCTGCCAGTCACATCTCTCCTCGGTCCTGGCGGAGACCCACCATCGAGTCCCACCGTGTGGCCATCTC
AGACACAGAGGACTGTGTGCAACTGAACCAGTACAAGCTGCAGAGTGAGATTGGCAAGGGTGCCTATGGT
GTGGTGAGGCTGGCCTACAACGAAAGTGAAGACAGACACTATGCAATGAAAGTTCTTTCCAAAAAGAAGT
TACTGAAGCAGTATGGCTTTCCTCGCCGTCCTCCCCCCAGAGGGTCCCAAGCTACCCAGGGAGGGCCAGC
CAAACAGCTGCTGCCCCTGGAGCGTGTGTATCAGGAGATTGCCATTCTAAAGAAGCTGGACCACGTGAAT
GTAGTCAAATTGATCGAGGTCCTGGATGATCCCGCTGAAGACAACCTCTATTTGGTGTTCGACCTCCTGA
GAAAAGGGCCAGTCATGGAAGTGCCCTGCGACAAGCCCTTCCCAGAGGAGCAAGCTCGCCTCTACCTCCG
GGACATCATCCTGGGCCTCGAGTACTTGCACTGCCAGAAGATTGTCCACAGGGACATCAAGCCATCTAAC
CTACTCCTTGGGGACGACGGGCATGTGAAGATCGCCGACTTTGGTGTCAGTAACCAGTTTGAGGGGAATG
ATGCTCAGCTGTCCAGTACGGCAGGGACCCCGGCATTCATGGCCCCGGAGGCCATTTCTGATTCCGGCCA
GAGCTTCAGTGGGAAGGCCTTGGATGTATGGGCCACTGGGGTCACGCTATATTGCTTTGTCTATGGGAAG
TGCCCGTTCATTGATGACTACATCCTGACCCTGCACCGTAAGATCAAGAATGAGGCCGTGGTGTTCCCTG
AGGAGCCAGAGGTCAGCGAGGACCTCAAAGACCTGATCCTGAGGATGCTAGACAAGAATCCTGAGACAAG
AATTGGGGTGTCAGATATCAAGTTACACCCTTGGGTGACCAAGCATGGAGAGGAGCCCCTCCCTTCAGAG
GAGGAGCACTGCAGTGTGGTGGAGGTGACCGAGGAAGAGGTGAAGAACTCAGTCAGGCTCATCCCCAGCT
GGACCACTGTGATCCTGGTCAAGTCTATGCTGAGAAAGCGTTCCTTTGGAAACCCATTCGAGCCCCAAGC
ACGCAGGGAAGAAAGATCCATGTCTGCACCAGGAAGCTTACTGATGAAAGAAGGATGCGGAGAAGGGTGC
AAAAGCCCAGAGCTTCCCGGAGTCCAGGAGGATGAGGCTGCGTCCTGA

Translation (505 aa):
MESGPAVCCQDPRAELVDRVAAINVAHLEEADEGPEPARNGVDPPPRARAASVIPGSASRPTPVRPSLSA
RKFSLQERPAGSCLGAQVGPYSTGPASHISPRSWRRPTIESHRVAISDTEDCVQLNQYKLQSEIGKGAYG
VVRLAYNESEDRHYAMKVLSKKKLLKQYGFPRRPPPRGSQATQGGPAKQLLPLERVYQEIAILKKLDHVN
VVKLIEVLDDPAEDNLYLVFDLLRKGPVMEVPCDKPFPEEQARLYLRDIILGLEYLHCQKIVHRDIKPSN
LLLGDDGHVKIADFGVSNQFEGNDAQLSSTAGTPAFMAPEAISDSGQSFSGKALDVWATGVTLYCFVYGK
CPFIDDYILTLHRKIKNEAVVFPEEPEVSEDLKDLILRMLDKNPETRIGVSDIKLHPWVTKHGEEPLPSE
EEHCSVVEVTEEEVKNSVRLIPSWTTVILVKSMLRKRSFGNPFEPQARREERSMSAPGSLLMKEGCGEGC
KSPELPGVQEDEAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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