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Report for CCDS38411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38411.1 Public Mus musculus 3 Dnajc19 23 108 98 CCDS HistoryNCBI Gene:67713Re-query CCDS DB by CCDS ID:38411.1Re-query CCDS DB by GeneID:67713See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011029.11 ENSMUSP00000011029.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011029.11Link to Ensembl Protein Viewer:ENSMUSP00000011029.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000011029Re-query CCDS DB by Protein ID:ENSMUSP00000011029
Original member Current member NCBI NM_001026211.2 NP_001021382.1 Accepted alive Link to Nucleotide Sequence:NM_001026211.2Link to Protein Sequence:NP_001021382.1Re-query CCDS DB by Nucleotide ID:NM_001026211Re-query CCDS DB by Protein ID:NP_001021382Link to BLAST:NP_001021382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001021382.1 157 Q9CQV7-2 157 99.3631% 0 1

Chromosomal Locations for CCDS 38411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 34057921 34058114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34078775 34078845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34079205 34079284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34080084 34080157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34080231 34080282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34081186 34081188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGCCAGCACAGTGGTAGCAGTCGGGTTGACCATTGCTGCTGCAGGATTTGCAGGCCGTTATGTTTTAC
AAGCCATGAAGCATGTGGAGCCTCAAGTAAAACAAGTTTTTCAGAGCCTACCAAAATCTGCATTCGGTGG
TGGGTACTACAGAGGTGGATTTGAACCCAAAATGACAAAACGGGAAGCAGCATTAATATTAGGTGTAAGC
CCTACTGCCAATAAAGGGAAGATCAGGGATGCTCATCGCCGGATTATGCTATTAAATCACCCAGACAAGG
GCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCTGTCGCAGCTGCTCATCAATCTGCAGACGTTC
CATTCTTAGTTGTTCCACTTCCTACGATCAAAACAAAAACCCTTTTACTGTGTGTGTGTGTGTGCACTCG
CGCGCACACACAGGCATTCATACACCTGTCAAACCATGTGAGACCACCATGTGA

Translation (157 aa):
MASTVVAVGLTIAAAGFAGRYVLQAMKHVEPQVKQVFQSLPKSAFGGGYYRGGFEPKMTKREAALILGVS
PTANKGKIRDAHRRIMLLNHPDKGPLVEEGLKPIPICRSCSSICRRSILSCSTSYDQNKNPFTVCVCVHS
RAHTGIHTPVKPCETTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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