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Report for CCDS50948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50948.1 Public Mus musculus 3 Gpatch4 23 108 98 CCDS HistoryNCBI Gene:66614Re-query CCDS DB by CCDS ID:50948.1Re-query CCDS DB by GeneID:66614See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029707.12 ENSMUSP00000029707.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029707.12Link to Ensembl Protein Viewer:ENSMUSP00000029707.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029707Re-query CCDS DB by Protein ID:ENSMUSP00000029707
Original member Current member EBI ENSMUST00000166021.7 ENSMUSP00000132699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166021.7Link to Ensembl Protein Viewer:ENSMUSP00000132699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166021Re-query CCDS DB by Protein ID:ENSMUSP00000132699
Original member Current member EBI ENSMUST00000193398.1 ENSMUSP00000141786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193398.1Link to Ensembl Protein Viewer:ENSMUSP00000141786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193398Re-query CCDS DB by Protein ID:ENSMUSP00000141786
Original member Current member NCBI NM_001110809.2 NP_001104279.1 Accepted alive Link to Nucleotide Sequence:NM_001110809.2Link to Protein Sequence:NP_001104279.1Re-query CCDS DB by Nucleotide ID:NM_001110809Re-query CCDS DB by Protein ID:NP_001104279Link to BLAST:NP_001104279.1
Original member Current member NCBI NM_001286857.1 NP_001273786.1 Accepted alive Link to Nucleotide Sequence:NM_001286857.1Link to Protein Sequence:NP_001273786.1Re-query CCDS DB by Nucleotide ID:NM_001286857Re-query CCDS DB by Protein ID:NP_001273786Link to BLAST:NP_001273786.1
Original member Current member NCBI NM_025663.4 NP_079939.3 Accepted alive Link to Nucleotide Sequence:NM_025663.4Link to Protein Sequence:NP_079939.3Re-query CCDS DB by Nucleotide ID:NM_025663Re-query CCDS DB by Protein ID:NP_079939Link to BLAST:NP_079939.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104279.1 415 Q3TFK5-1 415 100% 0 0
NP_001273786.1 415 Q3TFK5-1 415 100% 0 0
NP_079939.3 415 Q3TFK5-1 415 100% 0 0

Chromosomal Locations for CCDS 50948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88051211 88051289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88051673 88051746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88051845 88051937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88052032 88052118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88054369 88054460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88054703 88054753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88054958 88055729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAGTGTCACCCCAGAGGTCAAGAGCCGTGGGATGAAGTTTGCTGAAGAGCAGCTGCTGAAGCATGGAT
GGACTCAAGGCAAGGGCCTGGGCCGGAGGGAGAATGGCATTACCCAGGCCCTCAAGGTGACACTGAAGCA
AGATAACCATGGGGTGGGACATGACCCTGCCAAGGAATTTACAGACCACTGGTGGAGTGATCTCTTCAAC
AAGACTGCCGCCAGCTTGGTAGTGGACTCGGGGAAGGATGGAGTGCAGATAAGACGTCTTTCCAAGGAGA
CCACCCAGCGCAGTCACCCCAAACCCAGCTTGCTGTATCAGAAGTTTGTGAAGACAGCCACACTAACCTC
GGGTGAGGAGAAGCCTGACAGAGACTTGGGGAACTGCAGTGATGTTGACAACCATGAGCCCACGCCCCCA
AAGATTCTGACTGATGAGATGCTACTCAAGGCTTGCGAGGGGCGAACAGCACACAAGGCTGCCCGGATTG
GTATCACCATGAAGGCCAAGCTTGCTCGCCTGGAGGCCCAAGAGCAGGCCTTTCTGGCTCAGCTCAAAGG
CTCAAAGGCTCTGGGCACCTCTCAACCACTGACTGACAGTGAGCCTTCCCAAAAAAAGAAAAAGAAGAGG
AAGCAGAAAGAGGGGGAAGAGGCTGCAACAACTGAAAAGAGTCTAGGTGACGAGCTGCTGGGACACACGG
ACAGGAGCTTCAGGGACAGCAGGAAGAAGAAGAAGAGGCAGAAAGCCGAGAGACAGGGAACGGCTATAGG
AAGTGAGGAGGAAGAGGCTGCAGGAGAGAGTGGGCCCAGAGAACTGAGCACAGAGCAATCTGATCAGCCT
TCCAGGAAAAAGAAGAAAAGGAGGAAGCAGCGCCATGAAGAAGACGGGGAGATGGGAGTCTGTGATGAAG
GAGGTAGAGATGTGACAAGCCGGCCAAAGGCAGTCAACAGTGGAGGAGACAAAGACCCCAGGAGAAGCAG
CAAGAAGCGAGGGACGTGTGGGGAGGACTTAGATACCCAAGAGGAAGAAGGGAAGGATGACCTAACAAAA
GGAGAGAGAAAGGTCAGAAGAAAAGACAAAAGGAAAAGACAGCAGTGCTGTGAGGAGGACTTAGATGTAA
GCAGTAAAGATGATGGTGGGACATGGGTAGCAGAGGATGCAGGTGAGAGAAGTCGGCAATACCCAAAGGA
GAGAGCCAAAAAGAAGAAGCGGAAGAGGGACCGAGGGTCTGAAGTGGATCTCAGCTGA

Translation (415 aa):
MSVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRRENGITQALKVTLKQDNHGVGHDPAKEFTDHWWSDLFN
KTAASLVVDSGKDGVQIRRLSKETTQRSHPKPSLLYQKFVKTATLTSGEEKPDRDLGNCSDVDNHEPTPP
KILTDEMLLKACEGRTAHKAARIGITMKAKLARLEAQEQAFLAQLKGSKALGTSQPLTDSEPSQKKKKKR
KQKEGEEAATTEKSLGDELLGHTDRSFRDSRKKKKRQKAERQGTAIGSEEEEAAGESGPRELSTEQSDQP
SRKKKKRRKQRHEEDGEMGVCDEGGRDVTSRPKAVNSGGDKDPRRSSKKRGTCGEDLDTQEEEGKDDLTK
GERKVRRKDKRKRQQCCEEDLDVSSKDDGGTWVAEDAGERSRQYPKERAKKKKRKRDRGSEVDLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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