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Report for CCDS39466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39466.1 Public Mus musculus 6 Ssbp1 23 108 98 CCDS HistoryNCBI Gene:381760Re-query CCDS DB by CCDS ID:39466.1Re-query CCDS DB by GeneID:381760See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114779.8 ENSMUSP00000110427.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114779.8Link to Ensembl Protein Viewer:ENSMUSP00000110427.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114779Re-query CCDS DB by Protein ID:ENSMUSP00000110427
Original member Current member EBI ENSMUST00000121360.7 ENSMUSP00000113563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121360.7Link to Ensembl Protein Viewer:ENSMUSP00000113563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121360Re-query CCDS DB by Protein ID:ENSMUSP00000113563
Original member Current member EBI ENSMUST00000117411.7 ENSMUSP00000114082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117411.7Link to Ensembl Protein Viewer:ENSMUSP00000114082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117411Re-query CCDS DB by Protein ID:ENSMUSP00000114082
Original member Current member NCBI NM_001286663.1 NP_001273592.1 Accepted alive Link to Nucleotide Sequence:NM_001286663.1Link to Protein Sequence:NP_001273592.1Re-query CCDS DB by Nucleotide ID:NM_001286663Re-query CCDS DB by Protein ID:NP_001273592Link to BLAST:NP_001273592.1
Original member Current member NCBI NM_001364578.1 NP_001351507.1 Accepted alive Link to Nucleotide Sequence:NM_001364578.1Link to Protein Sequence:NP_001351507.1Re-query CCDS DB by Nucleotide ID:NM_001364578Re-query CCDS DB by Protein ID:NP_001351507Link to BLAST:NP_001351507.1
Original member Current member NCBI NM_212468.3 NP_997633.1 Accepted alive Link to Nucleotide Sequence:NM_212468.3Link to Protein Sequence:NP_997633.1Re-query CCDS DB by Nucleotide ID:NM_212468Re-query CCDS DB by Protein ID:NP_997633Link to BLAST:NP_997633.1

Chromosomal Locations for CCDS 39466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40472110 40472133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40474665 40474725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40476367 40476507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40476748 40476835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40477923 40478011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40480853 40480896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTT
TGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACA
GGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGT
GAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCC
TCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGG
CGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGATAACATTATATTTCTG
AGTGACCAGACAAAAGAAAAGGCATAG

Translation (148 aa):
MFRRPVLQVFRQFVRHESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDS
EVYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNNVRRQATTIIADNIIFL
SDQTKEKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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