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Report for CCDS33975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33975.1 Public Homo sapiens 4 KLHL5 24 110 108 CCDS HistoryNCBI Gene:51088Re-query CCDS DB by CCDS ID:33975.1Re-query CCDS DB by GeneID:51088See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 33975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261425.7 ENSP00000261425.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261425.7Link to Ensembl Protein Viewer:ENSP00000261425.3Re-query CCDS DB by Nucleotide ID:ENST00000261425Re-query CCDS DB by Protein ID:ENSP00000261425
Original member Current member EBI ENST00000504108.7 ENSP00000423897.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504108.7Link to Ensembl Protein Viewer:ENSP00000423897.2Re-query CCDS DB by Nucleotide ID:ENST00000504108Re-query CCDS DB by Protein ID:ENSP00000423897
Original member Current member NCBI NM_001007075.2 NP_001007076.1 Accepted alive Link to Nucleotide Sequence:NM_001007075.2Link to Protein Sequence:NP_001007076.1Re-query CCDS DB by Nucleotide ID:NM_001007075Re-query CCDS DB by Protein ID:NP_001007076Link to BLAST:NP_001007076.1
Original member Current member NCBI NM_015990.5 NP_057074.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015990.5Link to Protein Sequence:NP_057074.4Re-query CCDS DB by Nucleotide ID:NM_015990Re-query CCDS DB by Protein ID:NP_057074Link to BLAST:NP_057074.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007076.1 709 Q96PQ7-6 709 100% 0 0
NP_057074.4 709 Q96PQ7-6 709 100% 0 0

Chromosomal Locations for CCDS 33975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39062653 39063035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39075965 39076147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39081103 39081239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39081963 39082159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39086515 39086727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39096692 39096878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39103287 39103511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39107569 39107731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39113020 39113232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39115159 39115330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39121010 39121066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGTCTGGTTCTCGTAAAGAGTTTGATGTGAAACAGATTTTGAAAATCAGATGGAGGTGGTTTGGTCATC
AAGCATCATCTCCTAATTCTACAGTTGACAGCCAGCAGGGAGAATTTTGGAACCGAGGACAGACTGGAGC
AAACGGTGGGAGAAAGTTTTTAGATCCATGTAGCCTACAATTGCCTTTGGCTTCAATTGGTTACCGAAGG
TCCAGCCAACTGGATTTTCAGAATTCACCTTCTTGGCCAATGGCATCCACCTCTGAAGTCCCTGCATTTG
AGTTTACAGCAGAAGATTGTGGCGGTGCACATTGGCTGGATAGACCAGAAGTGGATGATGGCACTAGTGA
AGAAGAAAATGAATCTGATTCCAGTTCATGCAGGACTTCCAATAGTAGTCAGACATTATCATCCTGTCAT
ACTATGGAGCCATGTACATCAGATGAATTTTTCCAAGCCCTTAATCATGCCGAGCAAACATTTAAAAAAA
TGGAAAACTATTTGAGACATAAACAGTTGTGTGATGTAATTTTAGTCGCTGGTGATCGCAGAATTCCAGC
TCACAGATTGGTGCTCTCCTCTGTCTCAGACTATTTTGCTGCCATGTTTACTAATGATGTCAGAGAGGCA
AGACAAGAAGAAATAAAAATGGAAGGTGTAGAACCAAATTCGTTGTGGTCCTTGATCCAGTATGCTTATA
CAGGCCGCCTTGAATTAAAAGAAGATAATATTGAGTGCCTGTTATCTACAGCTTGCCTTCTTCAGCTTTC
ACAGGTTGTAGAAGCATGCTGTAAGTTTTTAATGAAACAGCTTCATCCATCCAACTGTCTTGGAATTCGT
TCTTTTGCTGATGCCCAAGGTTGTACAGATTTGCATAAAGTGGCTCACAATTATACTATGGAGCATTTCA
TGGAAGTAATCAGAAACCAGGAATTTGTATTATTACCAGCCAGCGAAATTGCAAAGCTCTTGGCTAGTGA
TGACATGAACATTCCTAATGAGGAGACAATATTGAATGCACTTCTTACTTGGGTCCGTCATGATTTGGAA
CAGAGACGGAAAGATCTAAGTAAACTTTTGGCTTATATTAGGCTACCTCTTCTTGCACCACAGTTCCTGG
CAGACATGGAAAATAATGTACTTTTTCGGGATGATATAGAATGTCAGAAACTCATTATGGAAGCAATGAA
GTACCATTTATTACCAGAGAGACGACCCATGTTACAAAGTCCTCGGACAAAACCTAGGAAGTCAACTGTT
GGTACATTATTTGCAGTTGGGGGAATGGATTCAACAAAAGGAGCAACAAGCATTGAAAAGTATGATCTCC
GTACAAATATGTGGACTCCAGTAGCAAATATGAATGGGAGGAGGCTACAGTTCGGTGTTGCAGTGCTAGA
TGACAAACTGTATGTGGTTGGAGGAAGAGATGGACTGAAGACTTTGAATACTGTAGAGTGCTACAACCCC
AAAACAAAAACTTGGAGTGTGATGCCACCTATGTCCACACATAGACATGGCCTTGGTGTGGCTGTACTGG
AAGGTCCCATGTATGCCGTAGGAGGACATGATGGCTGGAGCTATCTGAACACAGTGGAAAGATGGGACCC
TCAGGCTCGCCAGTGGAATTTTGTTGCCACTATGTCTACCCCTAGGAGTACAGTAGGTGTGGCAGTACTA
AGTGGAAAACTTTATGCAGTTGGTGGTCGTGATGGAAGTTCTTGTCTCAAATCAGTAGAATGTTTTGATC
CTCATACTAATAAGTGGACACTGTGTGCACAGATGTCAAAAAGGAGAGGTGGCGTAGGAGTGACGACCTG
GAATGGACTGCTGTATGCTATAGGGGGGCACGATGCTCCCGCATCCAACTTGACTTCCAGACTCTCAGAC
TGTGTGGAAAGATATGATCCCAAAACAGACATGTGGACTGCAGTAGCATCCATGAGCATCAGCAGAGATG
CAGTGGGGGTCTGTTTACTTGGTGATAAGTTATATGCTGTTGGGGGGTATGATGGACAGGCATACCTTAA
TACTGTGGAGGCTTATGATCCCCAGACAAATGAGTGGACCCAGGTTGCTCCACTGTGCCTAGGAAGAGCT
GGAGCTTGTGTTGTGACTGTAAAATTATAA

Translation (709 aa):
MSGSRKEFDVKQILKIRWRWFGHQASSPNSTVDSQQGEFWNRGQTGANGGRKFLDPCSLQLPLASIGYRR
SSQLDFQNSPSWPMASTSEVPAFEFTAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRTSNSSQTLSSCH
TMEPCTSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREA
RQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIR
SFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAKLLASDDMNIPNEETILNALLTWVRHDLE
QRRKDLSKLLAYIRLPLLAPQFLADMENNVLFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTV
GTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNP
KTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVL
SGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSD
CVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPLCLGRA
GACVVTVKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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