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Report for CCDS22881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22881.1 Public Mus musculus 9 Fbxl12 23 108 98 CCDS HistoryNCBI Gene:30843Re-query CCDS DB by CCDS ID:22881.1Re-query CCDS DB by GeneID:30843See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086458.9 ENSMUSP00000083649.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086458.9Link to Ensembl Protein Viewer:ENSMUSP00000083649.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086458Re-query CCDS DB by Protein ID:ENSMUSP00000083649
Original member Current member EBI ENSMUST00000140702.2 ENSMUSP00000114466.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140702.2Link to Ensembl Protein Viewer:ENSMUSP00000114466.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000140702Re-query CCDS DB by Protein ID:ENSMUSP00000114466
Original member Current member EBI ENSMUST00000131128.1 ENSMUSP00000115058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131128.1Link to Ensembl Protein Viewer:ENSMUSP00000115058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131128Re-query CCDS DB by Protein ID:ENSMUSP00000115058
Original member Current member NCBI NM_001002846.2 NP_001002846.1 Accepted alive Link to Nucleotide Sequence:NM_001002846.2Link to Protein Sequence:NP_001002846.1Re-query CCDS DB by Nucleotide ID:NM_001002846Re-query CCDS DB by Protein ID:NP_001002846Link to BLAST:NP_001002846.1
Original member Current member NCBI NM_001286530.1 NP_001273459.1 Accepted alive Link to Nucleotide Sequence:NM_001286530.1Link to Protein Sequence:NP_001273459.1Re-query CCDS DB by Nucleotide ID:NM_001286530Re-query CCDS DB by Protein ID:NP_001273459Link to BLAST:NP_001273459.1

Chromosomal Locations for CCDS 22881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20638377 20639198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGCGGCCGAAAGTCATGTGGCACCTCCTGCGCCGGTACATGGCGTCCCGGCTCTACTCGTTGCGCATGG
GCGGCTACCTGTTTTCTGGCTCTCAGGCCCCACAGCTGTCCCCCGCCTTGATGAGGGCCCTGGGTCAGAA
ATGCCCCAATCTGAAGCGCCTGTGCCTGCACGTGGCTGACCTGAGCATGGTGCCTATCACCAGCCTTCCT
AGCACACTGAGGACCCTGGAGCTGCACAGCTGCGAAATCTCCATGATCTGGTTGCAGAAAGAGCAGGACC
CCACGGTGCTGCCTCTGCTGGAATGCATCGTGCTGGACCGAGTGCCGGCCTTTCGCGATGAGCATCTGCA
GGGCCTTACCCGATTCCGAGCCCTGCGCTCGCTGGTGCTGGGCGGCACCTACCGGGTCACTGAGACCGGG
CTAGATGCCAGCCTGCAGGAGCTCAGCTACCTGCAAAGGCTTGAGGTGCTGGGCTGCACCCTGTCAGCTG
ACAGCACGCTGCTGGCCATCAGCCGCCACCTTCGAGATGTGCGCAAGATTCGGCTGACCGTTGGGGGCCT
CTCAGCCCAGGGCCTGGTCTTCCTGGAGGGAATGCCTGTCCTGGAGAGTTTGTGCTTCCAGGGTCCCCTT
ATCACCCCAGACATGCCCACACCCACTCAGATTGTGTCCTCCTGCCTCACCATGCCGAAGCTCAGAGTGC
TTGAGGTGCAAGGGCTGGGCTGGGAGGGTCAGGAAGCAGAGAAAATCCTGTGCAAGGGCCTGCCCCACTG
CATAGTTATTGTTAGGGCTTGTCCCAAAGAATCCATGGATTGGTGGATGTGA

Translation (273 aa):
MRPKVMWHLLRRYMASRLYSLRMGGYLFSGSQAPQLSPALMRALGQKCPNLKRLCLHVADLSMVPITSLP
STLRTLELHSCEISMIWLQKEQDPTVLPLLECIVLDRVPAFRDEHLQGLTRFRALRSLVLGGTYRVTETG
LDASLQELSYLQRLEVLGCTLSADSTLLAISRHLRDVRKIRLTVGGLSAQGLVFLEGMPVLESLCFQGPL
ITPDMPTPTQIVSSCLTMPKLRVLEVQGLGWEGQEAEKILCKGLPHCIVIVRACPKESMDWWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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