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Report for CCDS71603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71603.1 Public Mus musculus 5 Scfd2 23 108 98 CCDS HistoryNCBI Gene:212986Re-query CCDS DB by CCDS ID:71603.1Re-query CCDS DB by GeneID:212986See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113542.8 ENSMUSP00000109170.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113542.8Link to Ensembl Protein Viewer:ENSMUSP00000109170.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113542Re-query CCDS DB by Protein ID:ENSMUSP00000109170
Original member Current member NCBI NM_001286437.1 NP_001273366.1 Accepted alive Link to Nucleotide Sequence:NM_001286437.1Link to Protein Sequence:NP_001273366.1Re-query CCDS DB by Nucleotide ID:NM_001286437Re-query CCDS DB by Protein ID:NP_001273366Link to BLAST:NP_001273366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273366.1 644 Q8BTY8-2 644 100% 0 0

Chromosomal Locations for CCDS 71603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74206303 74206395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74225315 74225449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74236439 74236584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74397654 74397903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74462560 74462735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74482150 74482277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74519484 74519652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74530782 74531619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGAGCGCCGCGGGCATACTGGCCTTTGCCCAGCAAGGCTGGGAGCAGGTGCTGGCCAAAGTGAAGTGGT
CCGTGGTCTACCTGGACGCTGCCTGCGCCGAGAGCCTGCACTGGAGCTGCGGATCCAGCCGGCTTCTGGA
GGCGGTGAAGGGTCCTGCGTGTCACCTGCGGGAATTTGAACCCCAGGCCATTGGCGGGGGAGCCAAGCAG
CCCCGGGCGGTTTTCGTTTTGAGCAGCCCGCTGAAAGGCCGGATCGTAGACACTCTACAGAGTATCATTT
GCCGCAGTCACTTTCAGCACTGTGTGGTGGTCACAGCCGTGAGCCACGCAGTCCACCTCACTGCTAACCA
CGTACCGGCCGCTGCAGCGGCCGAGCTCGAGGGGCAGCAGCCGGTGTTCGAACAGCTGGAGGAGAAGCTC
TGTGAGTGGATGGGCAACGAGAACTATACGGCCGAGGTGCTCCACGTCCCGTTGTTTCTCGCCCCTGTTG
CCTCCCATCTCGCTTTTACTCCAGCCTTTGCTACCCTCTTCCCACTGCTACCTCAGGATGTCCACGCTCT
TAACAGTGCCAGACCCGACAAGAGGAGGCTGAGCAGCTTGGGTGAGGTGGATGCCACTGCCCTAACCCCA
GAGCTGCTGCTGTACATCAGATGCCTCGTGTCAGGCCTCAGTTCTCTGTGTGAACATCTAGGGGTACGAG
AGGAGTGTTTCGCCGTGGGTCCCCTCAGTCGGGTCATCGCTACAGATCTGGCAAATTATGCCCCCGCCAA
GAACAGGAAAAAGACTGCTACAGGCAGGGCTTCTGTGGTCTTTGTGGATAGAACTCTGGATCTCACAGGA
GCGGTTGGACACCACGGAGACAACTTAGTAGAGAAGATCATGTCAGTGCTTCCACAGCTTCCAGGCCACA
CCCACGACGTGATGGTCAACATGGCCGAGCTCACTGCTGTCCAGGCTGTGGAGGAAAACCAGAACGTGAT
TGCACCAGGCTGCCTTGCCCCATCCAATGAGGCCTCAGCCAAGGCCCTGTGGGAAGCCTTACTGAACTCC
AAGCACAAAGAGGCAGTGATGGAAGTTCGGAGACATCTAGTGGAAGCAGCCAGCAGAGAGAACCTGCCCA
TCAAGATGAGTATGGGAAGAGTCACTCCAGGGCAGCTCATGTCCTATATTCAACTCTTCAAGAACAACCT
CAGAGCTCTTAGAAATCACTGTGGGCTTCTACAGCTTGGGATGGCCACAGTTCAAACTCTGAAGCACCCA
CAGACTGCCAAGTGGGATAACTTCCTGGCATTTGAAAGGCTCCTTCTACAGAGCCTTGGGGATTCAACCA
TGGCTGGTGTGCTAAATCAGCTGCTGCCAATGATTAAGTCCTCAAGCCAGAGAACCAGTGACGACCTCAA
CCCTGAGGAACTGCTGATCCTGCTCATATACATTTACTCTGTCCCTGGAGACGTCACGCTGGACAGAGAC
CTGGGAGACGTGGAAGAAAAGGTGAAGAAAGCATTGGCCCATGTCCTCTCTGAGGAGTCTGAGCTGTCCC
CTTTGCTGCAGAAAATCACAGGCTGTGACTCTGCAGTTGACCTGACGTTGCCCAAATCCCAAATTGCTGT
GAATGATGTCTTCATGGCTCTCCGGGAGATCGCTGGAGCTAGGAATCTCATGAGACAGTTTAAGTCTGTG
TATGTTCCTGGAAATAACACCCATCAGGCATCCTATAAGCCGCTGTTGAAGCAGGTTGTGGAGGAAATAT
TTAATCCTGAGAAGTCAGATCCTATTGACATTGAACATATGTCCTCAGGCCTCACTGATCTCCTGAAAAC
TGGATTCAGCATGTTCATGAAGGTGATGGTGCTGTCCACAAGACTCCTGAAGCCGCTTAACATTCCCGAG
CTGCTCTTTGCAACTGACCGGCTACACCCAGACCTCGGCTTCTGA

Translation (644 aa):
MSAAGILAFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSRLLEAVKGPACHLREFEPQAIGGGAKQ
PRAVFVLSSPLKGRIVDTLQSIICRSHFQHCVVVTAVSHAVHLTANHVPAAAAAELEGQQPVFEQLEEKL
CEWMGNENYTAEVLHVPLFLAPVASHLAFTPAFATLFPLLPQDVHALNSARPDKRRLSSLGEVDATALTP
ELLLYIRCLVSGLSSLCEHLGVREECFAVGPLSRVIATDLANYAPAKNRKKTATGRASVVFVDRTLDLTG
AVGHHGDNLVEKIMSVLPQLPGHTHDVMVNMAELTAVQAVEENQNVIAPGCLAPSNEASAKALWEALLNS
KHKEAVMEVRRHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLRALRNHCGLLQLGMATVQTLKHP
QTAKWDNFLAFERLLLQSLGDSTMAGVLNQLLPMIKSSSQRTSDDLNPEELLILLIYIYSVPGDVTLDRD
LGDVEEKVKKALAHVLSEESELSPLLQKITGCDSAVDLTLPKSQIAVNDVFMALREIAGARNLMRQFKSV
YVPGNNTHQASYKPLLKQVVEEIFNPEKSDPIDIEHMSSGLTDLLKTGFSMFMKVMVLSTRLLKPLNIPE
LLFATDRLHPDLGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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