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Report for CCDS78200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78200.1 Public Homo sapiens 6 FAM120B 24 110 108 CCDS HistoryNCBI Gene:84498Re-query CCDS DB by CCDS ID:78200.1Re-query CCDS DB by GeneID:84498See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000630384.2 ENSP00000485745.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000630384.2Link to Ensembl Protein Viewer:ENSP00000485745.1Re-query CCDS DB by Nucleotide ID:ENST00000630384Re-query CCDS DB by Protein ID:ENSP00000485745
Original member Current member NCBI NM_001286379.2 NP_001273308.1 Accepted alive Link to Nucleotide Sequence:NM_001286379.2Link to Protein Sequence:NP_001273308.1Re-query CCDS DB by Nucleotide ID:NM_001286379Re-query CCDS DB by Protein ID:NP_001273308Link to BLAST:NP_001273308.1

Chromosomal Locations for CCDS 78200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 170291058 170291072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170317370 170319124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170323079 170323259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170330449 170330550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170348151 170348323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170358226 170358318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170388287 170388493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170391013 170391121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170395487 170395579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170404550 170404590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGGATCGCCAAATGATCCTTTCCCGGAGTTCAGTTATGGGTGTGAGAGGTTTGCAAGGATTTGTGGGAA
GTACCTGCCCACATATATGTACAGTAGTAAATTTCAAAGAACTGGCAGAGCACCACCGAAGCAAGTATCC
TGGATGTACCCCTACCATTGTGGTTGATGCCATGTGTTGTCTCAGATATTGGTATACTCCAGAATCTTGG
ATCTGCGGTGGCCAGTGGCGAGAATACTTTTCTGCTTTGCGAGATTTTGTTAAAACTTTTACGGCAGCTG
GGATCAAGTTGATATTCTTCTTTGATGGCATGGTGGAGCAGGATAAGAGAGATGAATGGGTGAAACGAAG
GCTCAAGAACAACAGGGAGATATCCAGGATTTTTCATTACATCAAGTCACACAAGGAGCAGCCAGGCAGA
AATATGTTCTTCATCCCCTCAGGGCTAGCTGTGTTTACACGATTTGCTCTAAAGACACTGGGCCAGGAAA
CTTTGTGTTCTTTGCAGGAAGCAGATTATGAGGTAGCTTCCTATGGCCTCCAGCATAACTGTCTTGGGAT
TCTGGGGGAAGACACTGATTACCTAATCTATGACACTTGTCCCTACTTTTCAATTAGCGAGCTCTGCCTA
GAGAGCCTGGACACCGTCATGCTCTGCAGAGAGAAGCTCTGTGAGAGTCTGGGCCTCTGTGTGGCCGACC
TTCCTCTTCTGGCCTGCCTCCTTGGCAACGACATAATCCCAGAGGGCATGTTTGAAAGCTTTAGGTACAA
ATGCTTATCGTCCTACACCTCTGTAAAAGAGAACTTTGACAAAAAAGGTAACATCATATTAGCTGTGTCA
GACCATATATCGAAAGTTCTTTACTTGTATCAAGGTGAGAAAAAATTAGAAGAGATATTACCTCTGGGAC
CAAACAAAGCTCTTTTTTATAAAGGAATGGCATCATATCTTTTACCAGGACAAAAATCTCCATGGTTTTT
CCAAAAACCCAAAGGTGTAATAACTTTGGACAAACAAGTAATATCCACGAGTTCAGACGCCGAATCCAGG
GAAGAAGTTCCCATGTGTTCAGATGCTGAATCCAGGCAAGAAGTTCCCATGTGTACAGGCCCTGAATCCA
GGCGAGAAGTTCCCGTGTATACAGATTCTGAACCCAGGCAAGAAGTTCCCATGTGTTCAGACCCTGAACC
CAGGCAAGAAGTTCCCACGTGTACAGGCCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGACCCTGAA
CCCAGGCAAGAAGTTCCCATGTGTACAGGCCCTGAAGCCAGGCAAGAAGTTCCCATGTATACAGACTCTG
AACCCAGGCAAGAAGTTCCCATGTATACAGACTCTGAACCCAGGCAAGAAGTTCCCATGTATACAGGCTC
TGAACCCAGGCAAGAAGTTCCCATGTATACAGGCCCTGAATCCAGGCAAGAAGTTCCCATGTATACAGGC
CCTGAATCCAGGCAAGAAGTTTTAATACGGACAGACCCTGAATCTAGGCAAGAAATTATGTGTACAGGCC
ATGAATCCAAACAGGAAGTTCCCATATGTACAGATCCTATATCCAAGCAAGAAGACTCCATGTGTACACA
CGCTGAAATCAATCAAAAATTACCTGTAGCAACAGATTTTGAATTTAAGCTAGAAGCTCTCATGTGTACA
AACCCTGAAATTAAACAAGAAGACCCCACAAATGTGGGGCCTGAAGTAAAGCAACAAGTAACCATGGTTT
CAGACACTGAAATCTTAAAGGTTGCTAGAACACATCACGTCCAAGCAGAAAGCTACCTGGTGTACAACAT
CATGAGCAGTGGAGAGATTGAATGCAGCAACACCCTAGAAGATGAGCTTGACCAGGCCTTACCCAGCCAG
GCCTTCATTTACCGTCCCATTCGACAGCGGGTCTACTCACTCTTACTGGAGGACTGTCAAGATGTCACCA
GCACCTGCCTAGCTGTCAAGGAGTGGTTTGTGTATCCTGGGAACCCACTGAGGCACCCGGACCTCGTCAG
GCCGCTGCAGATGACCATTCCAGGGGGAACGCCTAGTTTGAAAATATTATGGCTGAACCAAGAGCCAGAA
ATACAGGTTCGGCGCTTGGACACACTCCTAGCCTGTTTCAATCTTTCCTCCTCAAGAGAAGAGCTGCAGG
CTGTCGAAAGCCCATTTCAAGCTTTGTGCTGCCTCTTGATCTACCTCTTTGTCCAGGTGGACACGCTTTG
CCTGGAGGATTTGCATGCGTTTATTGCGCAGGCCTTGTGCCTCCAAGGAAAATCCACCTCGCAGCTTGTA
AATCTACAGCCTGATTACATCAACCCCAGAGCCGTGCAGCTGGGCTCCCTTCTCGTCCGCGGCCTCACCA
CTCTGGTTTTAGTCAACAGCGCATGTGGCTTCCCCTGGAAGACGAGTGATTTCATGCCCTGGAATGTATT
TGACGGGAAGCTTTTTCATCAGAAGTACTTGCAATCTGAAAAGGGTTATGCTGTGGAGGTTCTTTTAGAA
CAAAATAGATCTCGGCTCACCAAATTCCACAACCTGAAGGCAGTCGTCTGCAAGGCCTGCATGAAGGAGA
ACAGACGCATCACTGGCCGAGCCCACTGGGGCTCACACCACGCAGGGAGGTGGGGAAGACAGGGCTCCAG
CTACCACAGGACGGGCTCTGGGTATAGCCGTTCCAGTCAGGGACAGCCGTGGAGAGACCAGGGACCAGGA
AGCAGACAGTATGAGCATGACCAGTGGAGAAGGTACTAG

Translation (922 aa):
MDRQMILSRSSVMGVRGLQGFVGSTCPHICTVVNFKELAEHHRSKYPGCTPTIVVDAMCCLRYWYTPESW
ICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRLKNNREISRIFHYIKSHKEQPGR
NMFFIPSGLAVFTRFALKTLGQETLCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYFSISELCL
ESLDTVMLCREKLCESLGLCVADLPLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVS
DHISKVLYLYQGEKKLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQVISTSSDAESR
EEVPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRREVPMCSDPE
PRQEVPMCTGPEARQEVPMYTDSEPRQEVPMYTDSEPRQEVPMYTGSEPRQEVPMYTGPESRQEVPMYTG
PESRQEVLIRTDPESRQEIMCTGHESKQEVPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMCT
NPEIKQEDPTNVGPEVKQQVTMVSDTEILKVARTHHVQAESYLVYNIMSSGEIECSNTLEDELDQALPSQ
AFIYRPIRQRVYSLLLEDCQDVTSTCLAVKEWFVYPGNPLRHPDLVRPLQMTIPGGTPSLKILWLNQEPE
IQVRRLDTLLACFNLSSSREELQAVESPFQALCCLLIYLFVQVDTLCLEDLHAFIAQALCLQGKSTSQLV
NLQPDYINPRAVQLGSLLVRGLTTLVLVNSACGFPWKTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLE
QNRSRLTKFHNLKAVVCKACMKENRRITGRAHWGSHHAGRWGRQGSSYHRTGSGYSRSSQGQPWRDQGPG
SRQYEHDQWRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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