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Report for CCDS4977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4977.1 Public Homo sapiens 6 DDX43 24 110 108 CCDS HistoryNCBI Gene:55510Re-query CCDS DB by CCDS ID:4977.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4977.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370336.5 ENSP00000359361.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370336.5Link to Ensembl Protein Viewer:ENSP00000359361.4Re-query CCDS DB by Nucleotide ID:ENST00000370336Re-query CCDS DB by Protein ID:ENSP00000359361
Original member Current member NCBI NM_018665.3 NP_061135.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018665.3Link to Protein Sequence:NP_061135.2Re-query CCDS DB by Nucleotide ID:NM_018665Re-query CCDS DB by Protein ID:NP_061135Link to BLAST:NP_061135.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061135.2 648 Q9NXZ2-1 648 100% 0 0

Chromosomal Locations for CCDS 4977.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 73394906 73395155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73397689 73397744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73400234 73400363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73401859 73401990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73404690 73404771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73405679 73405835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73406364 73406482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73407505 73407615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73407960 73408101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73409248 73409348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73412205 73412292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73413658 73413785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73413970 73414079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73414548 73414686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73415497 73415584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 73416113 73416226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCCCACCACGGAGGAGCTCCCAAGGCCTCTACGTGGGTCGTTGCTAGTCGGCGAAGCTCGACAGTGT
CCCGAGCGCCAGAGAGGAGGCCGGCGGAGGAGTTGAATCGAACAGGTCCTGAGGGATATAGTGTCGGCAG
AGGTGGTCGCTGGAGAGGCACCTCTAGGCCCCCGGAGGCCGTGGCCGCTGGTCACGAGGAACTGCCGCTG
TGTTTTGCTTTGAAGAGCCACTTTGTTGGCGCGGTAATCGGTCGTGGTGGGTCAAAAATAAAGAATATAC
AAAGTACAACAAACACCACAATCCAAATAATACAAGAACAACCAGAATCATTAGTCAAAATTTTTGGCAG
CAAGGCAATGCAAACGAAAGCAAAAGCAGTGATAGACAATTTTGTTAAAAAGCTAGAAGAAAATTACAAT
TCAGAATGCGGAATTGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGATAACAATGTTG
TTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAGGAAGGTTTGAAATGGCAAAAAACAAA
GTGGGCAGATTTACCACCAATTAAGAAAAACTTTTATAAAGAGTCCACTGCCACAAGTGCCATGTCAAAA
GTAGAAGCAGATAGTTGGAGGAAAGAAAATTTTAATATAACGTGGGATGACTTGAAGGATGGGGAGAAAC
GACCTATCCCCAATCCTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAGGTTATGGAAAACAT
TAAAAAGGCAGGTTTTCAAAAGCCAACACCTATTCAGTCACAGGCATGGCCCATTGTGTTGCAAGGAATA
GATCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGTGTTATTTAATGCCTGGATTTATTCATC
TGGTCCTTCAACCCAGCCTTAAAGGTCAAAGGAATAGACCCGGCATGTTAGTTCTAACTCCCACTCGGGA
ATTAGCACTTCAAGTAGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGTTTGTGTATAT
GGTGGTGGAAATAGAGATGAACAAATAGAAGAGCTTAAAAAAGGTGTAGATATCATAATTGCAACTCCCG
GAAGATTGAATGATCTGCAAATGAGTAACTTCGTCAATCTGAAGAATATAACCTACTTGGTTTTAGATGA
AGCAGACAAGATGTTGGACATGGGATTTGAACCCCAGATAATGAAGATTTTGTTAGATGTGCGCCCAGAT
AGGCAGACAGTTATGACCAGTGCTACATGGCCTCATTCAGTTCATCGCCTCGCACAATCTTATTTGAAAG
AACCAATGATTGTCTATGTTGGTACATTGGATCTAGTTGCTGTAAGTTCAGTGAAGCAAAATATAATTGT
AACCACCGAGGAAGAGAAATGGAGTCACATGCAAACTTTTCTACAGAGTATGTCATCCACAGACAAAGTC
ATTGTCTTCGTTTCTCGAAAAGCTGTTGCGGATCACTTATCAAGTGACCTAATACTTGGAAATATATCAG
TAGAGTCTCTGCATGGAGATAGAGAACAGAGAGATCGGGAGAAAGCATTAGAGAACTTTAAAACAGGCAA
AGTGAGAATACTAATTGCAACTGATCTAGCCTCTAGAGGACTTGATGTCCATGACGTTACACATGTCTAT
AATTTTGACTTTCCACGGAATATTGAAGAATACGTACACCGAATAGGGCGCACGGGAAGAGCAGGGAGGA
CTGGTGTTTCCATTACAACTTTGACTAGAAATGATTGGAGGGTTGCCTCTGAATTGATTAATATTCTGGA
AAGAGCAAATCAGAGTATTCCAGAGGAGCTTGTATCAATGGCTGAGAGGTTTAAGGCACATCAACAGAAA
AGGGAAATGGAAAGAAAAATGGAAAGACCTCAAGGAAGGCCCAAGAAGTTTCATTAA

Translation (648 aa):
MSHHGGAPKASTWVVASRRSSTVSRAPERRPAEELNRTGPEGYSVGRGGRWRGTSRPPEAVAAGHEELPL
CFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPESLVKIFGSKAMQTKAKAVIDNFVKKLEENYN
SECGIDTAFQPSVGKDGSTDNNVVAGDRPLIDWDQIREEGLKWQKTKWADLPPIKKNFYKESTATSAMSK
VEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGI
DLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVY
GGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD
RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKV
IVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVY
NFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQQK
REMERKMERPQGRPKKFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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