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Report for CCDS75411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75411.1 Public Homo sapiens 6 SLC17A4 24 110 108 CCDS HistoryNCBI Gene:10050Re-query CCDS DB by CCDS ID:75411.1Re-query CCDS DB by GeneID:10050See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439485.6 ENSP00000391345.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439485.6Link to Ensembl Protein Viewer:ENSP00000391345.3Re-query CCDS DB by Nucleotide ID:ENST00000439485Re-query CCDS DB by Protein ID:ENSP00000391345
Original member Current member NCBI NM_001286121.1 NP_001273050.1 Accepted alive Link to Nucleotide Sequence:NM_001286121.1Link to Protein Sequence:NP_001273050.1Re-query CCDS DB by Nucleotide ID:NM_001286121Re-query CCDS DB by Protein ID:NP_001273050Link to BLAST:NP_001273050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273050.1 443 Q9Y2C5-2 443 100% 0 0

Chromosomal Locations for CCDS 75411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25769056 25769190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770067 25770300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770384 25770471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770926 25771012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25773275 25773393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25773513 25773674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25776595 25776727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25776812 25776959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25777926 25778016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25779054 25779188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGAACTTGAGCATTGCCATCCCAGCTATGGTGAACAACACAGCCCCACCTAGCCAGCCCAATGCTTCCA
CAGAACGGCCCTCCACTGACTCCCAGGGCTACTGGAATGAAACTCTAAAAGAATTTAAAGCAATGGCCCC
TGCATATGACTGGAGTCCTGAAATCCAGGGAATCATCCTCAGCTCCCTCAACTATGGCTCATTCTTGGCT
CCAATCCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGTATGTGGTTGGTGCTGGCTTGTTTATTT
CCTCATTCCTGACCCTCTTCATTCCACTGGCAGCTAATGCGGGAGTGGCCTTGCTCATTGTCCTCCGGAT
TGTACAAGGCATAGCCCAGGTTATGGTATTAACTGGTCAGTATTCAATTTGGGTCAAATGGGCTCCCCCA
CTGGAAAGGAGTCAACTCACCACCATTGCTGGATCAGGGTCAATGCTGGGGTCCTTCATTGTTCTACTTG
CTGGTGGTCTCCTCTGCCAGACCATAGGATGGCCTTACGTCTTCTATATCTTTGGAGGAATTGGCTGTGC
TTGTTGTCCTCTCTGGTTTCCTCTCATTTATGATGATCCTGTGAATCATCCCTTTATCAGTGCTGGTGAG
AAGAGATACATTGTGTGTTCATTGGCTCAGCAGGACTGTTCACCAGGCTGGTCTCTTCCCATTAGGGCTA
TGATCAAATCCTTACCACTCTGGGCCATTTTAGTCTCTTATTTCTGTGAATACTGGCTTTTTTATACCAT
TATGGCGTACACACCAACGTACATCAGCTCGGTACTTCAAGCCAACCTCAGAGATAGTGGGATCCTGTCT
GCCTTGCCGTTTGTTGTTGGATGTATCTGCATTATCCTTGGAGGTCTACTGGCAGACTTTCTTCTCTCCA
GAAAAATCCTCAGACTCATCACCATCAGGAAACTCTTCACTGCCATTGGGGTTCTCTTCCCATCCGTGAT
CCTCGTGTCCCTGCCCTGGGTCAGATCCAGCCACAGCATGACCATGACCTTCTTGGTGCTGTCTTCTGCC
ATCAGCAGCTTCTGTGAATCAGGAGCCCTTGTTAACTTCTTGGATATTGCTCCTCGGTACACTGGCTTTC
TCAAAGGACTATTGCAAGTCTTTGCACACATAGCTGGAGCCATCTCTCCTACTGCTGCTGGATTTTTCAT
CAGTCAGGATTCAGAGTTTGGTTGGAGAAATGTCTTCTTGCTTTCAGCTGCTGTTAACATATCGGGCCTG
GTTTTCTACCTCATCTTTGGCCGAGCAGATGTGCAGGACTGGGCTAAAGAGCAGACATTCACCCACCTCT
GA

Translation (443 aa):
MNLSIAIPAMVNNTAPPSQPNASTERPSTDSQGYWNETLKEFKAMAPAYDWSPEIQGIILSSLNYGSFLA
PIPSGYVAGIFGAKYVVGAGLFISSFLTLFIPLAANAGVALLIVLRIVQGIAQVMVLTGQYSIWVKWAPP
LERSQLTTIAGSGSMLGSFIVLLAGGLLCQTIGWPYVFYIFGGIGCACCPLWFPLIYDDPVNHPFISAGE
KRYIVCSLAQQDCSPGWSLPIRAMIKSLPLWAILVSYFCEYWLFYTIMAYTPTYISSVLQANLRDSGILS
ALPFVVGCICIILGGLLADFLLSRKILRLITIRKLFTAIGVLFPSVILVSLPWVRSSHSMTMTFLVLSSA
ISSFCESGALVNFLDIAPRYTGFLKGLLQVFAHIAGAISPTAAGFFISQDSEFGWRNVFLLSAAVNISGL
VFYLIFGRADVQDWAKEQTFTHL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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