NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34796.1 Public Homo sapiens 8 AGPAT5 24 110 108 CCDS HistoryNCBI Gene:55326Re-query CCDS DB by CCDS ID:34796.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285518.11 ENSP00000285518.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285518.11Link to Ensembl Protein Viewer:ENSP00000285518.6Re-query CCDS DB by Nucleotide ID:ENST00000285518Re-query CCDS DB by Protein ID:ENSP00000285518
Original member Current member NCBI NM_018361.5 NP_060831.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018361.5Link to Protein Sequence:NP_060831.2Re-query CCDS DB by Nucleotide ID:NM_018361Re-query CCDS DB by Protein ID:NP_060831Link to BLAST:NP_060831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060831.2 364 Q9NUQ2 364 100% 0 0

Chromosomal Locations for CCDS 34796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 6708669 6708887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6724870 6724939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6730711 6730826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6732561 6732650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6741661 6741751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6747670 6747828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6755051 6755174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6757163 6757388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCTGCTGTCCCTGGTGCTCCACACGTACTCCATGCGCTACCTGCTGCCCAGCGTCGTGCTCCTGGGCA
CGGCGCCCACCTACGTGTTGGCCTGGGGGGTCTGGCGGCTGCTCTCCGCCTTCCTGCCCGCCCGCTTCTA
CCAAGCGCTGGACGACCGGCTCTACTGCGTCTACCAGAGCATGGTGCTCTTCTTCTTCGAGAATTACACC
GGGGTCCAGATATTGCTATATGGAGATTTGCCAAAAAATAAAGAAAATATAATATATTTAGCAAATCATC
AAAGCACAGTTGACTGGATTGTTGCTGACATCTTGGCCATCAGGCAGAATGCGCTAGGACATGTGCGCTA
CGTGCTGAAAGAAGGGTTAAAATGGCTGCCATTGTATGGGTGTTACTTTGCTCAGCATGGAGGAATCTAT
GTAAAGCGCAGTGCCAAATTTAACGAGAAAGAGATGCGAAACAAGTTGCAGAGCTACGTGGACGCAGGAA
CTCCAATGTATCTTGTGATTTTTCCAGAAGGTACAAGGTATAATCCAGAGCAAACAAAAGTCCTTTCAGC
TAGTCAGGCATTTGCTGCCCAACGTGGCCTTGCAGTATTAAAACATGTGCTAACACCACGAATAAAGGCA
ACTCACGTTGCTTTTGATTGCATGAAGAATTATTTAGATGCAATTTATGATGTTACGGTGGTTTATGAAG
GGAAAGACGATGGAGGGCAGCGAAGAGAGTCACCGACCATGACGGAATTTCTCTGCAAAGAATGTCCAAA
AATTCATATTCACATTGATCGTATCGACAAAAAAGATGTCCCAGAAGAACAAGAACATATGAGAAGATGG
CTGCATGAACGTTTCGAAATCAAAGATAAGATGCTTATAGAATTTTATGAGTCACCAGATCCAGAAAGAA
GAAAAAGATTTCCTGGGAAAAGTGTTAATTCCAAATTAAGTATCAAGAAGACTTTACCATCAATGTTGAT
CTTAAGTGGTTTGACTGCAGGCATGCTTATGACCGATGCTGGAAGGAAGCTGTATGTGAACACCTGGATA
TATGGAACCCTACTTGGCTGCCTGTGGGTTACTATTAAAGCATAG

Translation (364 aa):
MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVLFFFENYT
GVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIY
VKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKA
THVAFDCMKNYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRW
LHERFEIKDKMLIEFYESPDPERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWI
YGTLLGCLWVTIKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH