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Report for CCDS3842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3842.1 Public Homo sapiens 4 UFSP2 24 110 108 CCDS HistoryNCBI Gene:55325Re-query CCDS DB by CCDS ID:3842.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3842.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264689.11 ENSP00000264689.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264689.11Link to Ensembl Protein Viewer:ENSP00000264689.6Re-query CCDS DB by Nucleotide ID:ENST00000264689Re-query CCDS DB by Protein ID:ENSP00000264689
Original member Current member NCBI NM_018359.5 NP_060829.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018359.5Link to Protein Sequence:NP_060829.2Re-query CCDS DB by Nucleotide ID:NM_018359Re-query CCDS DB by Protein ID:NP_060829Link to BLAST:NP_060829.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060829.2 469 Q9NUQ7 469 100% 0 0

Chromosomal Locations for CCDS 3842.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185400392 185400478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185403494 185403618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185405780 185405856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185407936 185408060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185408271 185408435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185413726 185413872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185415155 185415347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185415710 185415867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185418441 185418507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185418587 185418770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185422485 185422563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185425866 185425868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGTGATTTCAGAAAGTATGGATATACTCTTCAGAATAAGAGGAGGCCTTGATTTGGCTTTTCAGCTAG
CTACTCCTAATGAAATTTTTCTCAAGAAGGCACTGAAACATGTGTTGAGTGACCTGTCAACTAAGCTGTC
TTCAAACGCCCTTGTGTTCAGAATTTGCCACAGTTCAGTGTATATATGGCCTAGCAGTGACATAAACACC
ATTCCTGGAGAACTGACTGATGCTTCTGCTTGTAAGAACATACTGCGCTTTATTCAATTTGAGCCAGAAG
AAGATATAAAAAGAAAATTCATGAGAAAGAAGGACAAAAAGTTATCAGACATGCATCAAATAGTAAATAT
AGATCTTATGCTGGAAATGTCAACCTCCCTGGCAGCTGTAACGCCCATCATTGAAAGGGAAAGCGGAGGA
CACCATTATGTTAATATGACTTTACCTGTCGATGCAGTTATATCTGTTGCTCCAGAAGAAACATGGGGAA
AAGTTCGTAAACTCCTGGTTGATGCAATTCATAATCAACTAACTGACATGGAAAAATGTATTTTGAAATA
TATGAAAGGAACATCTATTGTGGTCCCTGAACCACTGCACTTTTTATTACCAGGGAAAAAAAATCTTGTA
ACAATTTCATATCCTTCAGGAATACCAGATGGCCAGCTGCAGGCCTATAGGAAGGAGTTACATGATCTTT
TCAATCTGCCTCACGACAGACCCTATTTCAAAAGGTCTAATGCTTATCACTTTCCAGATGAGCCATACAA
AGATGGTTACATTAGAAATCCACATACTTACCTTAATCCACCTAACATGGAGACTGGTATGATTTATGTG
GTCCAGGGCATATATGGCTATCATCATTATATGCAGGATCGCATAGATGACAATGGCTGGGGCTGTGCTT
ATCGATCTCTGCAGACTATCTGCTCTTGGTTCAAACATCAGGGATACACAGAGAGGTCCATTCCAACACA
CAGAGAAATTCAGCAGGCTCTAGTCGATGCCGGGGACAAACCAGCAACATTTGTCGGATCGCGGCAATGG
ATTGGATCTATTGAGGTGCAGCTGGTACTAAACCAATTGATCGGTATAACGTCAAAAATCCTGTTTGTCA
GCCAAGGTTCAGAAATTGCCTCTCAAGGACGGGAACTGGCTAATCATTTCCAAAGTGAAGGAACTCCAGT
TATGATCGGGGGAGGAGTTTTGGCCCACACAATACTAGGAGTTGCATGGAATGAGATTACAGGGCAGATA
AAGTTTCTGATTCTAGATCCACATTATACCGGTGCTGAAGACCTGCAAGTTATTTTGGAAAAGGGCTGGT
GCGGATGGAAGGGCCCAGATTTTTGGAACAAGGATGCATACTATAACTTATGTCTTCCTCAGCGACCAAA
TATGATTTAA

Translation (469 aa):
MVISESMDILFRIRGGLDLAFQLATPNEIFLKKALKHVLSDLSTKLSSNALVFRICHSSVYIWPSSDINT
IPGELTDASACKNILRFIQFEPEEDIKRKFMRKKDKKLSDMHQIVNIDLMLEMSTSLAAVTPIIERESGG
HHYVNMTLPVDAVISVAPEETWGKVRKLLVDAIHNQLTDMEKCILKYMKGTSIVVPEPLHFLLPGKKNLV
TISYPSGIPDGQLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGMIYV
VQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQW
IGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIGGGVLAHTILGVAWNEITGQI
KFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNLCLPQRPNMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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