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Report for CCDS20848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20848.1 Public Mus musculus 7 Sae1 23 108 98 CCDS HistoryNCBI Gene:56459Re-query CCDS DB by CCDS ID:20848.1Re-query CCDS DB by GeneID:56459See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094815.4 ENSMUSP00000092409.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094815.4Link to Ensembl Protein Viewer:ENSMUSP00000092409.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094815Re-query CCDS DB by Protein ID:ENSMUSP00000092409
Original member Current member EBI ENSMUST00000210999.1 ENSMUSP00000147409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210999.1Link to Ensembl Protein Viewer:ENSMUSP00000147409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210999Re-query CCDS DB by Protein ID:ENSMUSP00000147409
Original member Current member NCBI NM_001285891.1 NP_001272820.1 Accepted alive Link to Nucleotide Sequence:NM_001285891.1Link to Protein Sequence:NP_001272820.1Re-query CCDS DB by Nucleotide ID:NM_001285891Re-query CCDS DB by Protein ID:NP_001272820Link to BLAST:NP_001272820.1
Original member Current member NCBI NM_019748.3 NP_062722.1 Accepted alive Link to Nucleotide Sequence:NM_019748.3Link to Protein Sequence:NP_062722.1Re-query CCDS DB by Nucleotide ID:NM_019748Re-query CCDS DB by Protein ID:NP_062722Link to BLAST:NP_062722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272820.1 350 Q9R1T2-1 350 100% 0 0
NP_062722.1 350 Q9R1T2-1 350 100% 0 0

Chromosomal Locations for CCDS 20848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16327837 16327929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16330613 16330682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16336694 16336838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16359036 16359141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16366807 16366906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16368509 16368651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16370287 16370460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16378365 16378476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16387641 16387750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGTAGAGAAGGAGGAGGCTGGCGGCGGCGGCGGCGGTGGCATCAGCGAGGAGGAGGCAGCGCAGTATG
ACCGACAGATCCGCCTGTGGGGACTGGAGGCCCAGAAGCGGCTTCGAGCTTCCCGGGTGCTGATTGTTGG
CATGAAAGGACTTGGAGCTGAAATTGCCAAGAATCTTATCCTGGCAGGAGTCAAAGGGCTCACCATGCTG
GACCACGAACAGGTATCTCCAGAAGACCCTGGAGCTCAGTTCTTGATTCAGACTGGGTCTGTGGGCCGCA
ATAGGGCCGAGGCCTCTTTGGAACGAGCCCAGAATCTCAATCCCATGGTGGATGTAAAGGTGGACACTGA
GGATGTAGAGAAGAAGCCAGAGTCCTTCTTCACGAAGTTTGATGCGGTGTGCCTGACTTGCTGCTCCAGA
GATGTCATCATTAAAGTCGACCAGATCTGTCACAGAAACAGCATTAAGTTCTTCACAGGAGATGTCTTTG
GGTACCATGGGTACACCTTTGCGAATCTTGGAGAGCATGAATTTGTAGAAGAGAAAACCAAAGTTGCCAA
AGTAAGCCAAGGAGTGGAAGATGGACCTGAGGCCAAGAGAGCAAAGCTTGATTCATCAGAGACAACCATG
GTCAAAAAGAAAGTGCTTTTTTGCCCTGTAAAAGAGGCGCTAGAAGTGGACTGGAGTGGAGAGAAAGCCA
AGGCTGCCCTGAAGCGTACTGCCCCCGACTACTTTCTGCTGCAAGTGCTGCTGAAATTCCGCACAGATAA
AGGGAGAGATCCGACTTCTGAGAGCTACAAGGAGGATGCGGAGCTGCTGCTGCAGATACGGAATGACGTG
TTTGACTCCCTGGGCATCAGTCCTGACCTGCTTCCCGATGACTTTGTCAGGTACTGCTTCTCTGAGATGG
CCCCAGTATGTGCTGTGGTTGGAGGGATCTTGGCACAGGAAATTGTGAAGGCCCTGTCTCAAAGGGACCC
TCCTCACAACAACTTCTTCTTCTTCGACGGCATGAAGGGGAGTGGAATTGTGGAGTGCCTTGGTCCCCAG
TGA

Translation (350 aa):
MVEKEEAGGGGGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTML
DHEQVSPEDPGAQFLIQTGSVGRNRAEASLERAQNLNPMVDVKVDTEDVEKKPESFFTKFDAVCLTCCSR
DVIIKVDQICHRNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPEAKRAKLDSSETTM
VKKKVLFCPVKEALEVDWSGEKAKAALKRTAPDYFLLQVLLKFRTDKGRDPTSESYKEDAELLLQIRNDV
FDSLGISPDLLPDDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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