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Report for CCDS18664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18664.1 Public Mus musculus 4 Zmym6 23 108 98 CCDS HistoryNCBI Gene:100177Re-query CCDS DB by CCDS ID:18664.1Re-query CCDS DB by GeneID:100177See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046751.12 ENSMUSP00000045366.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046751.12Link to Ensembl Protein Viewer:ENSMUSP00000045366.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046751Re-query CCDS DB by Protein ID:ENSMUSP00000045366
Original member Current member NCBI NM_001285885.1 NP_001272814.1 Accepted alive Link to Nucleotide Sequence:NM_001285885.1Link to Protein Sequence:NP_001272814.1Re-query CCDS DB by Nucleotide ID:NM_001285885Re-query CCDS DB by Protein ID:NP_001272814Link to BLAST:NP_001272814.1
Original member Current member NCBI NM_177462.5 NP_803413.1 Accepted alive Link to Nucleotide Sequence:NM_177462.5Link to Protein Sequence:NP_803413.1Re-query CCDS DB by Nucleotide ID:NM_177462Re-query CCDS DB by Protein ID:NP_803413Link to BLAST:NP_803413.1

Chromosomal Locations for CCDS 18664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127078457 127078546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127086975 127087041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127088329 127088554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127092912 127093083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127100610 127100760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127101849 127101964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127103412 127103687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127104271 127104421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127105274 127105446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127106576 127106723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127108548 127108715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127109925 127109962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127120428 127120572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127122349 127124177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3750 nt):
ATGAAAGAACCTTTGGATGGTGGATGTGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAG
AAGAACCTGATGATGCTCATGAATATGGACCTCAAGAAAGTGAACTAAAAATCAGTGCCGTGTTTTCAGC
CGGTGACACTTCTCTCGGCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTT
CCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGG
CCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACC
TCTTCCCAAGAGAACCTGTGCACATTGCTCCAAAGACATTTTAAATCCGATGGATGTGATCACAACTCAG
TTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGC
CTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGATAATTT
GGCCCCGAAGCCACTCTATGCCTTGGGGAATTCATCGAGGCTGTCTGCTGAAATGATTGAGACTACAAAT
GACTCAGGAAGAACAGAGCTTTTTTGCTCTATTAACTGCTTATCTGCGTACAGAATTAAGACTGTTATTT
CTTCAGGTATACAGGTTGTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTATCACCTAGCAATGTC
AAATGGAACTATTTGCAGTTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAGAATGTATTTAACAAGCCA
AAGGGAAGAAACTCTTCATTGGCACCCATATCTCAGGGCCAAGAGGTGAGGAGCACACCTGTGCAGTCTG
CAGTGTTAGCAAGAAAAGATGCCCCTGCCTCTTCCTTCAGTAGCCCCATCAGCAACCCTGCTGCAACAGC
CCTGGAGACTCTTGCTAAACAGTCCCACCAGATTGCTTTGACCCATTTATTCTTGAAACTCACGTGCCTG
CAGTGTAGTCTTCTGTTTGCCACAAAGCCAGAGCTGCTTTTCTACAAGGGTAGGATGTTTATGTTTTGCA
GCAAGGCTTGCTGTGATGAATACAAAAGGCAGAATAAAGTTAAGGCCTTGTGCGACTACTGTAAGCTACA
GAAGACCATAGAGGACACGGTGCGGTTCTCAGGGATTGACAAGCCGTTCTGTAGTGAAGTTTGCAAGGTC
CTCTCGGCTCGAGACTTTGGGGAAAGATGGGGAAGCTACTGTAAGACGTGCAGTTACTGTTTACAGACGT
CTGCAAATTTTGTGGAAAACCAACTGGAAGGCAAGCTCCAGGTTTTTTGCTGTGAAGATTGCATGTCTAA
GTTTACAGCTCTGTTGCATCAGACAGCCAGGTGTGATGGTTGTAAACGGCAGGGTAAGCTAAGTGAGTCC
TTGAAATGGAGAGGCAACATCAAATACTTCTGTAACCTGTTCTGTGTCTTGCAGTTTTGCCATCAGTATA
GTGTGAATGACCCAATTCCACAAAGAAAAGTATTTGTGCTCCCAAAGCCAGCACAGGTAATTATTCCTAA
GGCACAAACTGCTGTGACAGCACTCCCTTCTCCAAGGATAGCTACAACACCAGTTATAACCAGTGTGACA
TCATTGGCAAAAATACCTGCACTTCAGCCCACCAGGAACACGAACAATGTTTTAACAGGTGCTGGTCCTA
CAGAGGTAACAAAGATCATTGGAAATGGAAGTGCACAGGCACCTGCTGAGAGACTTCAGCCTCTGCAGCC
CCCCAAGCTTCTGAAGAACAAAGGCATATTGTGCAAGCCAGTCACCCAGACCAAGGCCACCTCTTGCAGG
CCACATACCCACCATGCTGCATGCCAGACAGATTTACCTCTGCCAGAATGGAAGAGTGAAGAACCTGAGT
CTCCACCGGCAAAAAGAAGAAGAGTAGACTTTTCCCAGACTTACAATGCAGAGTATATCAGATTCGGTTT
CATTATCTGTTCTGGATCAGAGGAAAGTTCACCAAGCCCACAGTGTGTCATTTGTGGAGAGGTCTTACCT
AGTGAAAGTGTGATGCCAGTAAGTCTTTCTAACCATTTGAAGGCAAAACATTCAGACTTAGAGAACAAGC
CTGTAGACTTTTTTGAGGAAAAGTCACTTGAAATGGAATGTCAAAATAGTTCTTTAAAAAAGTGTTTACT
AGTTGAAGAGTCACTTGTGAAAGCTTCTTATTTAATCGCTTTCCAAATTGCCGCCAGGAATAAGCCATTC
TCGATTGCTGAAGAATTAATTAAACCATATTTAGTAGAAATGTGTTCAGAAGTTTTAGGTTCAAGTGCTG
GAGAAAAAATGAAAACCATCCCTCTTTCTAATAGCACAATTGGGTGCAGGATCAAGAAACTGTCTGATGA
CATCGAAGATCAGCTGCTGCAGAAGGTCAGGGAGTCCAGGTGGTTTGCCCTTCAGGTGGACGAGTCGTCT
GAGGCCACAGAGGTGCCGCTTCTCCTCTGCTATGTCCGCTTCATCGACTATGACCGTGGAGATGTGAAAG
AAGAATTACTTTTTTGCACTGAAATGCCTTCTCCGAGCACAGATCTTGAAGTGTTTGAATTAATAAATAA
ATATATTGATAGCAGATCTCTGAATTGGAACCATTGTGTTGGTTTCTGTACTGATGGGGCCGCAAGCATG
ACTGACAGGTATTTTCGTTTAAGGTCAAAAATTCAAGAAATTGCCAAGAATACAGTGACATTTACACATT
GTTTCATTCACCGTGAACACTTAGCAGCCAAAAAGCTATCTCCATGCTTACATGAAATTCTTTTGCAGTC
ATCACAAATTTTAAGCTTTGTAAAGAACAGTGCTTCAGATTCACAAATGTTGACAATTTTGTGTGAAGAG
ATGGGATCTGAGCATGTGAATTTACCACTTAATGCTGAAGTACGCTGGCTGTCGAGAGGGAGAATTTTAA
CAAGATTATTTGAACTGAGACATGAAATTGAAATATTTTTAAATCAAAAGCATTCAGATTTGGCCAGGTA
TTTCCATGATGAGGAATGGATTGCAAAGCTAGCCTATCTAGCAGATATATTTTCACTTATAAATAAATTA
AATTCAAGTCTCCAAGGAACCATGACTACTTTTTTCAATTTGTATAATAAAGTTGACGTATTTCAGAAAA
GGCTAAAAATGTGGTTGAAGCGTGCACAGGAGAATGATTACGGCATGTTCCCTCTGTTTTCTGAGTTCTT
GGACTCATCAGATGTAAGTGTGAAAAACATTGCTAGCATCATTTTTGAGCACCTGGAAGGACTTTCTCAG
ATATTCCATGCCTGTTACCCACCAGAAGAGGACTTGCGTTCCGGAAACCTGTGGCTCACAGATCCTTTTG
CCACTTACCACAGTAACAATCTCACTGACTCCGAGGAAGAGAAACTCGCCGTGTTATCTGCCGATACGGG
ATTTCAGTCAGTTCACAAGTCAATGTCTGTCACACAGTTTTGGGTCAATGCAAAGACAAGTTATCCCAAG
CTCCATGAAAAGGCATTGAAGCTGCTGCTGCCCTTCTCAAGCACCTGTCTGTGCGATGCCACCTTTTCAG
CCTTGACTGCATCCAAACAGAGAGACCTTCGGACTTGCGGTCCCACCCTAAGACTGGCAGTCACATCATT
AGTTCCAAGGATAGAAAAGTTAGCAAAGGAGAAAGAGTAG

Translation (1249 aa):
MKEPLDGGCDKAMAQQGLLDRIKEEPDDAHEYGPQESELKISAVFSAGDTSLGFQVGLPSSGPSTSFPAV
PAAQVFCFGCKKLLLKGQPTYRKAGFAQLYCSMGCIIRFSSAVCVPPLPKRTCAHCSKDILNPMDVITTQ
FENSSLCKDFCSQSCLFSYELKKPVVTIYTSGISAKCSMCQKGTDNLAPKPLYALGNSSRLSAEMIETTN
DSGRTELFCSINCLSAYRIKTVISSGIQVVCHSCKTAAVPQYHLAMSNGTICSFCSSNCVLAFQNVFNKP
KGRNSSLAPISQGQEVRSTPVQSAVLARKDAPASSFSSPISNPAATALETLAKQSHQIALTHLFLKLTCL
QCSLLFATKPELLFYKGRMFMFCSKACCDEYKRQNKVKALCDYCKLQKTIEDTVRFSGIDKPFCSEVCKV
LSARDFGERWGSYCKTCSYCLQTSANFVENQLEGKLQVFCCEDCMSKFTALLHQTARCDGCKRQGKLSES
LKWRGNIKYFCNLFCVLQFCHQYSVNDPIPQRKVFVLPKPAQVIIPKAQTAVTALPSPRIATTPVITSVT
SLAKIPALQPTRNTNNVLTGAGPTEVTKIIGNGSAQAPAERLQPLQPPKLLKNKGILCKPVTQTKATSCR
PHTHHAACQTDLPLPEWKSEEPESPPAKRRRVDFSQTYNAEYIRFGFIICSGSEESSPSPQCVICGEVLP
SESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPF
SIAEELIKPYLVEMCSEVLGSSAGEKMKTIPLSNSTIGCRIKKLSDDIEDQLLQKVRESRWFALQVDESS
EATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASM
TDRYFRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEE
MGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKL
NSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYGMFPLFSEFLDSSDVSVKNIASIIFEHLEGLSQ
IFHACYPPEEDLRSGNLWLTDPFATYHSNNLTDSEEEKLAVLSADTGFQSVHKSMSVTQFWVNAKTSYPK
LHEKALKLLLPFSSTCLCDATFSALTASKQRDLRTCGPTLRLAVTSLVPRIEKLAKEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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