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Report for CCDS11411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11411.1 Public Homo sapiens 17 KLHL11 24 110 108 CCDS HistoryNCBI Gene:55175Re-query CCDS DB by CCDS ID:11411.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319121.4 ENSP00000314608.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319121.4Link to Ensembl Protein Viewer:ENSP00000314608.3Re-query CCDS DB by Nucleotide ID:ENST00000319121Re-query CCDS DB by Protein ID:ENSP00000314608
Original member Current member NCBI NM_018143.3 NP_060613.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018143.3Link to Protein Sequence:NP_060613.1Re-query CCDS DB by Nucleotide ID:NM_018143Re-query CCDS DB by Protein ID:NP_060613Link to BLAST:NP_060613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060613.1 708 Q9NVR0 708 100% 0 0

Chromosomal Locations for CCDS 11411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41853740 41855321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41864826 41865370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGCGGCTGCGGCAGTGGCGGCGGCGGCGGCGGCGGCCGCGGCTGCATCTCTTCAGGTACTGGAGATGG
AGAGCATGGAGACGGCCGCCGCCGGCTCGGCAGGACTGGCCGCCGAGGTCCGAGGCAGCGGCACGGTGGA
CTTCGGGCCTGGGCCGGGGATCTCTGCAATGGAGGCGAGCGGGGGCGATCCGGGCCCAGAAGCCGAGGAT
TTCGAGTGCAGCTCTCACTGCTCAGAGCTGTCCTGGCGGCAGAACGAGCAGCGGCGCCAGGGCCTCTTCT
GCGACATTACCCTGTGCTTCGGCGGGGCTGGAGGCCGCGAGTTCCGGGCCCACCGCTCGGTACTGGCTGC
CGCCACCGAGTACTTCACGCCCCTGCTCTCGGGCCAGTTTTCCGAGTCCCGCTCGGGACGGGTGGAGATG
CGCAAGTGGAGCTCCGAGCCGGGGCCCGAACCCGACACAGTGGAAGCCGTAATCGAGTACATGTACACCG
GGCGCATCCGCGTCAGCACGGGCAGCGTGCACGAGGTGCTGGAGTTGGCCGACAGGTTCCTACTCATTCG
TTTAAAAGAATTTTGTGGAGAATTTCTCAAGAAAAAACTTCATCTCTCAAATTGTGTGGCAATTCATAGC
TTAGCACACATGTACACCCTGAGCCAACTTGCTCTGAAGGCTGCTGATATGATACGGAGAAATTTCCACA
AAGTGATTCAGGATGAAGAATTTTATACGTTACCTTTCCATCTCATTAGAGACTGGCTTTCAGATTTGGA
AATTACAGTTGATTCTGAAGAGGTTCTCTTTGAAACCGTTTTGAAATGGGTTCAGAGAAATGCTGAAGAG
AGAGAGAGATACTTTGAAGAACTTTTTAAATTGCTCAGGTTGTCCCAGATGAAACCTACCTACCTTACTC
GACATGTCAAACCAGAGAGGCTGGTAGCCAATAATGAAGTTTGTGTCAAGTTGGTCGCTGACGCAGTGGA
GAGACATGCTCTGAGAGCTGAGAATATACAATCTGGCACATGCCAGCACCCCACTTCTCATGTGTCACTA
TTGCCTCGTTATGGGCAAAACATGGATGTGATCATGGTTATTGGAGGTGTGTCAGAAGGAGGGGACTATT
TAAGTGAATGTGTGGGATACTTTGTTGATGAGGACAGATGGGTAAATCTGCCACATATTCATAATCACCT
CGATGGACATGCTGTTGCAGTAACAGAATCCTACGTGTATGTTGCTGGATCAATGGAGCCAGGGTTTGCT
AAAACTGTAGAAAGGTATAACCCAAATTTGAATACATGGGAACATGTTTGTAGTCTGATGACAAGAAAGC
ATTCTTTTGGACTAACAGAAGTCAAAGGGAAGCTCTATAGCATTGGAGGACATGGCAACTTTAGTCCTGG
TTTTAAAGATGTGACTGTTTATAATCCTGAGCTTGATAAATGGCACAACTTGGAATCGGCACCAAAGATT
CTTCGAGATGTCAAAGCACTAGCCATTGAAGACCGGTTTGTATACATTGCCGCCCGCACTCCTGTAGACC
GGGACACTGAAGATGGATTAAAGGCTGTAATTACTTGCTATGATACAGAGACTCGACAGTGGCAAGATGT
GGAATCTTTGCCGCTTATTGACAATTACTGCTTTTTCCAAATGTCTGTGGTCAATTCAAACTTTTATCAG
ACAGCATCATGTTGTCCCAAGAGTTATTGTTTAGAAAACGAAGAGGCAGTAAGAAAAATTGCCAGCCAAG
TGTCTGATGAGATCCTTGAAAGCTTGCCTCCAGAAGTCCTAAGCATCGAAGGAGCAGCCATTTGCTATTA
CAAAGATGATGTCTTCATTATAGGAGGCTGGAAAAACAGTGATGATATTGATAAACAGTATCGGAAAGAA
GCCTACCGATATTGTGCGGAGAGGAAGAGGTGGATGCTTCTTCCTCCTATGCCACAACCTCGTTGTAGAG
CCACTGCTTGTCACGTGAGGATCCCATACCGGTACTTGCATGGCACACAGAGATACCCTATGCCTCAAAA
CCTGATGTGGCAGAAGGACCGCATCAGACAGATGCAAGAGATACATCGTCACGCCCTGAACATGAGGCGA
GTGCCAAGCTCTCAGATTGAATGCTAG

Translation (708 aa):
MAAAAVAAAAAAAAAASLQVLEMESMETAAAGSAGLAAEVRGSGTVDFGPGPGISAMEASGGDPGPEAED
FECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEM
RKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS
LAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEE
RERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAENIQSGTCQHPTSHVSL
LPRYGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAVTESYVYVAGSMEPGFA
KTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDKWHNLESAPKI
LRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWQDVESLPLIDNYCFFQMSVVNSNFYQ
TASCCPKSYCLENEEAVRKIASQVSDEILESLPPEVLSIEGAAICYYKDDVFIIGGWKNSDDIDKQYRKE
AYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQEIHRHALNMRR
VPSSQIEC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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