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Report for CCDS11295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11295.1 Public Homo sapiens 17 SLFN12 24 110 108 CCDS HistoryNCBI Gene:55106Re-query CCDS DB by CCDS ID:11295.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304905.10 ENSP00000302077.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304905.10Link to Ensembl Protein Viewer:ENSP00000302077.5Re-query CCDS DB by Nucleotide ID:ENST00000304905Re-query CCDS DB by Protein ID:ENSP00000302077
Original member Current member EBI ENST00000394562.5 ENSP00000378063.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394562.5Link to Ensembl Protein Viewer:ENSP00000378063.1Re-query CCDS DB by Nucleotide ID:ENST00000394562Re-query CCDS DB by Protein ID:ENSP00000378063
Original member Current member EBI ENST00000452764.3 ENSP00000394903.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452764.3Link to Ensembl Protein Viewer:ENSP00000394903.2Re-query CCDS DB by Nucleotide ID:ENST00000452764Re-query CCDS DB by Protein ID:ENSP00000394903
Original member Current member NCBI NM_001289009.2 NP_001275938.1 Accepted alive Link to Nucleotide Sequence:NM_001289009.2Link to Protein Sequence:NP_001275938.1Re-query CCDS DB by Nucleotide ID:NM_001289009Re-query CCDS DB by Protein ID:NP_001275938Link to BLAST:NP_001275938.1
Original member Current member NCBI NM_018042.5 NP_060512.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018042.5Link to Protein Sequence:NP_060512.3Re-query CCDS DB by Nucleotide ID:NM_018042Re-query CCDS DB by Protein ID:NP_060512Link to BLAST:NP_060512.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275938.1 578 Q8IYM2 578 100% 0 0
NP_060512.3 578 Q8IYM2 578 100% 0 0

Chromosomal Locations for CCDS 11295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35411338 35411927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35420274 35420381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35421990 35423028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAACATCAGTGTTGATTTGGAAACGAATTATGCCGAGTTGGTTCTAGATGTGGGAAGAGTCACTCTTG
GAGAGAACAGTAGGAAAAAAATGAAGGATTGTAAACTGAGAAAAAAGCAGAATGAAAGTGTCTCACGAGC
TATGTGTGCTCTGCTCAATTCTGGAGGGGGAGTGATCAAGGCTGAAATTGAGAATGAAGACTATAGTTAT
ACAAAAGATGGAATAGGACTAGATTTGGAAAATTCTTTTAGTAACATTCTGTTATTTGTTCCTGAGTACT
TAGACTTCATGCAGAATGGTAACTACTTTCTGATTTTTGTGAAGTCATGGAGCTTGAACACCTCTGGTCT
GCGGATTACCACCTTGAGCTCCAATTTGTACAAAAGAGATATAACATCTGCAAAAGTCATGAATGCCACT
GCTGCACTGGAGTTCCTCAAAGACATGAAAAAGACTAGAGGGAGATTGTATTTAAGACCAGAATTGCTGG
CAAAGAGGCCCTGTGTTGATATACAAGAAGAAAATAACATGAAGGCCTTGGCCGGGGTTTTTTTTGATAG
AACAGAACTTGATCGGAAAGAAAAATTGACCTTTACTGAATCCACACATGTTGAAATTAAAAACTTCTCG
ACAGAAAAGTTGTTACAACGAATTAAAGAGATTCTCCCTCAATATGTTTCTGCATTTGCAAATACTGATG
GAGGATATTTGTTCATTGGTTTAAATGAAGATAAAGAAATAATTGGCTTTAAAGCAGAGATGAGTGACCT
CGATGACTTAGAAAGAGAAATCGAAAAGTCCATTAGGAAGATGCCTGTGCATCACTTCTGTATGGAGAAG
AAGAAGATAAATTATTCATGCAAATTCCTTGGAGTATATGATAAAGGAAGTCTTTGTGGATATGTCTGTG
CACTCAGAGTGGAGCGCTTCTGCTGTGCAGTGTTTGCTAAAGAGCCTGATTCCTGGCATGTGAAAGATAA
CCGTGTGATGCAGTTGACCAGGAAGGAATGGATCCAGTTCATGGTGGAGGCTGAACCAAAATTTTCCAGT
TCATATGAAGAGGTGATCTCTCAAATAAATACGTCATTACCTGCTCCCCACAGTTGGCCTCTTTTGGAAT
GGCAACGGCAGAGACATCACTGTCCAGGGCTATCAGGAAGGATAACGTATACTCCAGAAAACCTTTGCAG
AAAACTGTTCTTACAACATGAAGGACTTAAGCAATTAATATGTGAAGAAATGGACTCTGTCAGAAAGGGC
TCACTGATCTTCTCTAGGAGCTGGTCTGTGGATCTGGGCTTGCAAGAGAACCACAAAGTCCTCTGTGATG
CTCTTCTGATTTCCCAGGACAGTCCTCCAGTCCTATACACCTTCCACATGGTACAGGATGAGGAGTTTAA
AGGCTATTCTACACAAACTGCCCTAACCTTAAAGCAGAAGCTGGCAAAAATTGGTGGTTACACTAAAAAA
GTGTGTGTCATGACAAAGATCTTCTACTTGAGCCCTGAAGGCATGACAAGCTGCCAGTATGATTTAAGGT
CGCAAGTAATTTACCCTGAATCCTACTATTTTACAAGAAGGAAATACTTGCTGAAAGCCCTTTTTAAAGC
CTTAAAGAGACTCAAGTCTCTGAGAGACCAGTTTTCCTTTGCAGAAAATCTATACCAGATAATCGGTATA
GATTGCTTTCAGAAGAATGATAAAAAGATGTTTAAATCTTGTCGAAGGCTCACCTGA

Translation (578 aa):
MNISVDLETNYAELVLDVGRVTLGENSRKKMKDCKLRKKQNESVSRAMCALLNSGGGVIKAEIENEDYSY
TKDGIGLDLENSFSNILLFVPEYLDFMQNGNYFLIFVKSWSLNTSGLRITTLSSNLYKRDITSAKVMNAT
AALEFLKDMKKTRGRLYLRPELLAKRPCVDIQEENNMKALAGVFFDRTELDRKEKLTFTESTHVEIKNFS
TEKLLQRIKEILPQYVSAFANTDGGYLFIGLNEDKEIIGFKAEMSDLDDLEREIEKSIRKMPVHHFCMEK
KKINYSCKFLGVYDKGSLCGYVCALRVERFCCAVFAKEPDSWHVKDNRVMQLTRKEWIQFMVEAEPKFSS
SYEEVISQINTSLPAPHSWPLLEWQRQRHHCPGLSGRITYTPENLCRKLFLQHEGLKQLICEEMDSVRKG
SLIFSRSWSVDLGLQENHKVLCDALLISQDSPPVLYTFHMVQDEEFKGYSTQTALTLKQKLAKIGGYTKK
VCVMTKIFYLSPEGMTSCQYDLRSQVIYPESYYFTRRKYLLKALFKALKRLKSLRDQFSFAENLYQIIGI
DCFQKNDKKMFKSCRRLT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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