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Report for CCDS13510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13510.1 Public Homo sapiens 20 GID8 24 110 108 CCDS HistoryNCBI Gene:54994Re-query CCDS DB by CCDS ID:13510.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266069.5 ENSP00000266069.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266069.5Link to Ensembl Protein Viewer:ENSP00000266069.3Re-query CCDS DB by Nucleotide ID:ENST00000266069Re-query CCDS DB by Protein ID:ENSP00000266069
Original member Current member NCBI NM_017896.3 NP_060366.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017896.3Link to Protein Sequence:NP_060366.1Re-query CCDS DB by Nucleotide ID:NM_017896Re-query CCDS DB by Protein ID:NP_060366Link to BLAST:NP_060366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060366.1 228 Q9NWU2 228 100% 0 0

Chromosomal Locations for CCDS 13510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62941503 62941620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62942987 62943183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62943495 62943692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62944739 62944912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGAGTTATGCAGAAAAACCCGATGAAATCACGAAAGATGAGTGGATGGAAAAGCTCAATAACTTGCATG
TCCAGAGAGCAGACATGAACCGCCTCATCATGAACTACCTGGTCACAGAGGGCTTTAAGGAAGCAGCGGA
GAAGTTTCGAATGGAATCTGGAATCGAACCTAGTGTGGATCTGGAAACACTTGATGAACGAATCAAGATC
CGGGAGATGATACTGAAAGGTCAGATTCAGGAGGCCATCGCCTTGATCAACAGCCTCCACCCAGAGCTCT
TGGACACAAACCGGTATCTTTACTTCCATTTGCAGCAACAGCATTTGATCGAGCTGATCCGCCAGCGGGA
GACAGAGGCGGCGCTGGAGTTTGCACAGACTCAGCTGGCGGAGCAGGGCGAGGAGAGCCGAGAGTGCCTC
ACAGAGATGGAGCGTACCCTGGCACTGCTGGCCTTTGACAGTCCCGAGGAGTCGCCCTTCGGAGACCTCC
TCCACACCATGCAGAGGCAGAAGGTGTGGAGTGAAGTTAACCAAGCTGTGCTAGATTATGAAAATCGCGA
GTCAACACCCAAACTGGCAAAATTACTGAAACTACTACTTTGGGCTCAGAACGAGCTGGACCAGAAGAAA
GTAAAATATCCCAAAATGACAGACCTCAGCAAGGGTGTGATTGAGGAGCCCAAGTAG

Translation (228 aa):
MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKI
REMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECL
TEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQKK
VKYPKMTDLSKGVIEEPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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