NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3536.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3536.2 Public Homo sapiens 4 ODAM 24 110 108 CCDS HistoryNCBI Gene:54959Re-query CCDS DB by CCDS ID:3536.2See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3536.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396094.6 ENSP00000379401.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396094.6Link to Ensembl Protein Viewer:ENSP00000379401.2Re-query CCDS DB by Nucleotide ID:ENST00000396094Re-query CCDS DB by Protein ID:ENSP00000379401
Original member Current member EBI ENST00000683306.1 ENSP00000507531.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683306.1Link to Ensembl Protein Viewer:ENSP00000507531.1Re-query CCDS DB by Nucleotide ID:ENST00000683306Re-query CCDS DB by Protein ID:ENSP00000507531
Original member Current member NCBI NM_017855.4 NP_060325.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017855.4Link to Protein Sequence:NP_060325.3Re-query CCDS DB by Nucleotide ID:NM_017855Re-query CCDS DB by Protein ID:NP_060325Link to BLAST:NP_060325.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060325.3 279 A1E959 279 100% 0 0

Chromosomal Locations for CCDS 3536.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70196544 70196594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70196692 70196733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70197274 70197321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70197924 70198157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70198579 70198626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70200497 70200601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70201454 70201501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70202258 70202329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70202756 70202917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70203156 70203185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGAAAATTATAATTCTTCTTGGATTCCTGGGAGCCACATTGTCAGCCCCACTTATCCCACAGCGTCTCA
TGTCTGCCAGCAATAGCAATGAGTTACTTCTTAATCTTAATAATGGTCAACTTTTGCCACTACAACTTCA
GGGCCCACTTAATTCATGGATTCCACCTTTCTCTGGAATTTTACAACAGCAGCAGCAGGCTCAAATTCCA
GGACTCTCCCAGTTCTCTTTATCAGCTCTAGACCAGTTTGCTGGACTGCTCCCAAATCAGATACCCTTAA
CAGGAGAGGCCAGTTTTGCCCAAGGAGCCCAGGCAGGCCAAGTTGATCCCTTACAGCTTCAAACACCGCC
TCAGACACAACCAGGCCCCAGTCACGTGATGCCCTATGTATTCTCCTTCAAAATGCCTCAAGAGCAAGGA
CAGATGTTTCAATACTATCCAGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAACAGTTCCAAGGT
CACCTCAACAAACAAGACAGCAACAGTATGAGGAGCAGATACCATTCTATGCTCAATTTGGATACATTCC
ACAACTAGCAGAACCTGCTATATCAGGAGGACAGCAGCAACTAGCTTTTGATCCCCAACTAGGCACAGCT
CCTGAAATTGCTGTGATGTCAACAGGAGAAGAGATACCATATTTACAAAAAGAAGCGATCAACTTTAGAC
ATGACAGTGCAGGAGTTTTCATGCCCTCAACTTCACCAAAACCCAGCACAACCAATGTTTTCACTTCTGC
TGTAGACCAAACTATTACCCCAGAGCTCCCAGAAGAGAAGGACAAGACTGACAGCCTAAGGGAACCATAA

Translation (279 aa):
MKIIILLGFLGATLSAPLIPQRLMSASNSNELLLNLNNGQLLPLQLQGPLNSWIPPFSGILQQQQQAQIP
GLSQFSLSALDQFAGLLPNQIPLTGEASFAQGAQAGQVDPLQLQTPPQTQPGPSHVMPYVFSFKMPQEQG
QMFQYYPVYMVLPWEQPQQTVPRSPQQTRQQQYEEQIPFYAQFGYIPQLAEPAISGGQQQLAFDPQLGTA
PEIAVMSTGEEIPYLQKEAINFRHDSAGVFMPSTSPKPSTTNVFTSAVDQTITPELPEEKDKTDSLREP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH