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Report for CCDS29971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29971.1 Public Mus musculus X Praf2 23 108 98 CCDS HistoryNCBI Gene:54637Re-query CCDS DB by CCDS ID:29971.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033489.7 ENSMUSP00000033489.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033489.7Link to Ensembl Protein Viewer:ENSMUSP00000033489.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033489Re-query CCDS DB by Protein ID:ENSMUSP00000033489
Original member Current member NCBI NM_138602.4 NP_613068.1 Accepted alive Link to Nucleotide Sequence:NM_138602.4Link to Protein Sequence:NP_613068.1Re-query CCDS DB by Nucleotide ID:NM_138602Re-query CCDS DB by Protein ID:NP_613068Link to BLAST:NP_613068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613068.1 178 Q9JIG8 178 100% 0 0

Chromosomal Locations for CCDS 29971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7728584 7728762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7729716 7729933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7730268 7730407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCGGAGGTGCGGCTGCCACCGCTGCGCGCCCTAGACGACTTTGTCCTGGGGTCTGCGCGCCTGGCGG
CTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTCTACTACCAAACCAA
TTACCTTCTCTGCTTTGGCATCAGTCTTGCGCTGGCCGGGTACATTCGTCCGCTGCACACCCTCCTGAGT
GCACTGGTAGTGGTGGTGGCCCTCGGGGTGCTGGTGTGGGCTGCTGAAACCCGTGCAGCTGTGCGCCGCT
GCCGTCGCAGCCACCCTGCTGCCTGCCTGGCTGCAGTGCTTGCCATTAGCCTCTTCATTCTCTGGGCCGT
GGGTGGCGCCTTCACCTTCCTGCTCAGCATCACAGCGCCTGTGTTTTTGATCCTGCTGCATGCTTCACTG
CGTCTGAGAAACCTTAAAAACAAGATTGAGAACAAGATCGAGAGCATCGGTCTAAAGCGGACACCAATGG
GATTGCTTCTAGAGGCACTGGGACAGGAGCAGGAAGCTGGATCCTAG

Translation (178 aa):
MSEVRLPPLRALDDFVLGSARLAAPDPGDPQRWCHRVINNLLYYQTNYLLCFGISLALAGYIRPLHTLLS
ALVVVVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAISLFILWAVGGAFTFLLSITAPVFLILLHASL
RLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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