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Report for CCDS52337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52337.1 Public Mus musculus 7 Or51aa2 23 108 98 CCDS HistoryNCBI Gene:545985Re-query CCDS DB by CCDS ID:52337.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104879.1 ENSMUSP00000100473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104879.1Link to Ensembl Protein Viewer:ENSMUSP00000100473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104879Re-query CCDS DB by Protein ID:ENSMUSP00000100473
Original member Current member EBI ENSMUST00000214269.2 ENSMUSP00000149996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214269.2Link to Ensembl Protein Viewer:ENSMUSP00000149996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214269Re-query CCDS DB by Protein ID:ENSMUSP00000149996
Original member Current member EBI ENSMUST00000215663.1 ENSMUSP00000150524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215663.1Link to Ensembl Protein Viewer:ENSMUSP00000150524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215663Re-query CCDS DB by Protein ID:ENSMUSP00000150524
Original member Current member NCBI NM_001200027.1 NP_001186956.1 Accepted alive Link to Nucleotide Sequence:NM_001200027.1Link to Protein Sequence:NP_001186956.1Re-query CCDS DB by Nucleotide ID:NM_001200027Re-query CCDS DB by Protein ID:NP_001186956Link to BLAST:NP_001186956.1

Chromosomal Locations for CCDS 52337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103538261 103539232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCTTCATGTCAACATCACCAACTCCATCTTCTCCACCTTCCTGGTTACAGGCATTCCAGGGCTGGAGG
CAGTGTACATCTGGATAGCCATACCATTCTGTGCCATGTTTCTCATCACTATGGTGGGCAACATGACCAT
CATAATTGTTATCTGGCGTGAGCAGACTCTTCATGTTCCTATGTATCTATTCCTGGCCATGTTAGCTTCC
TCTGATCTGGGTCTCTCTCTGTTTACCTTCCCCACTCTGTTGAGAATCTTCCTGCTGAATGATAGAGAGT
TGACCACCACTGCTTGTTTCACACAGATGTTCTTCATTCACACTTTCCAAGACCTTGAATCAGCTATTAT
TCTGGCAATGGCCTTCGATCGGTATGTGGCCATTTCTCACCCACTTCACTATCACTCCATTCTCACAGAC
ACTGTGATTGCCAAGATAGGCTTGGCTATTGTTGTACGAACCTTAACTGTGCAGGTGCCTCTCCCTATCC
TCTTGAAGAGATTGTACTTTTGTCATTCCAATGTACTATCTCATTCCTACTGTTTGCATCCTGACATCAT
AAAGCTATCCTGCTCCAGTACTACTGTCAACAGTATCTTTGGACTTTTTGTAGTGCTCTCCACCATGGGG
CTTGACTTCCTCCTCATCCTACTCTCATATGCATTGATTCTGAAAACAGTACTGAGTATGGCTTCCCACA
GTGGCCGCCTCAAGGCTCTCAACACCTGCATCTCTCATCTGTGTGCTGTGGTCCTCTTCTTCACACCCAT
GATCTGCCTATCCATGCTGCATCGTTTTGGTCCAAGGCTTCCCTCACATGTCTATGTGACCCTGGCCAAC
ATGCACTTTCTAATTCCTCCAGTGATGAACCCCATCGTCTATGTGGTGAAAACCAAGCAGATCCGTGACA
AAATTCAGAAACTCTTCATTAGAAAAGCAACAAAGAAAGCTCAGGCTGCATCTATAACATAA

Translation (323 aa):
MLHVNITNSIFSTFLVTGIPGLEAVYIWIAIPFCAMFLITMVGNMTIIIVIWREQTLHVPMYLFLAMLAS
SDLGLSLFTFPTLLRIFLLNDRELTTTACFTQMFFIHTFQDLESAIILAMAFDRYVAISHPLHYHSILTD
TVIAKIGLAIVVRTLTVQVPLPILLKRLYFCHSNVLSHSYCLHPDIIKLSCSSTTVNSIFGLFVVLSTMG
LDFLLILLSYALILKTVLSMASHSGRLKALNTCISHLCAVVLFFTPMICLSMLHRFGPRLPSHVYVTLAN
MHFLIPPVMNPIVYVVKTKQIRDKIQKLFIRKATKKAQAASIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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