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Report for CCDS71443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71443.1 Public Mus musculus 4 Agbl4 23 108 98 CCDS HistoryNCBI Gene:78933Re-query CCDS DB by CCDS ID:71443.1Re-query CCDS DB by GeneID:78933See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106592.7 ENSMUSP00000102202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106592.7Link to Ensembl Protein Viewer:ENSMUSP00000102202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106592Re-query CCDS DB by Protein ID:ENSMUSP00000102202
Original member Current member NCBI NM_001284190.2 NP_001271119.1 Accepted alive Link to Nucleotide Sequence:NM_001284190.2Link to Protein Sequence:NP_001271119.1Re-query CCDS DB by Nucleotide ID:NM_001284190Re-query CCDS DB by Protein ID:NP_001271119Link to BLAST:NP_001271119.1

Chromosomal Locations for CCDS 71443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 110397872 110397905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110478465 110478587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110580051 110580175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 110955567 110955661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111118825 111119041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111331240 111331279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111526584 111526673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111547183 111547297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111566618 111566729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111614960 111615112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111617120 111617282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111656326 111656422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111662904 111663024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGCGGAGCGGAGCCAGACAGCGCCAGAGGCAGGCAATGATACAGGAAATGAGGATGCCATTGGAGGGA
ATGTGAACAAATACATAGTGCTTCCAAATGGATACTCTGGACAGCCCAAGAAAGGACATCTTACCTTTGA
TGCTTGCTTTGAAAGTGGTAACCTCGGCCGGGTTGAGCAAGTCTCTGATTTTGAGTATGATCTGTTCATT
AGGCCGGACACCTGTAATCCACGCTTCCGAGTCTGGTTCAACTTTACTGTTGAAAATGTGAAAGAATTGC
AGAGGGTAATTTTCAACATTGTTAACTTCAGTAAAACCAAGAGTCTTTACCGAGATGGGATGGCACCAAT
GGTGAAATCTACCAGCAGACCAAAATGGCAAAGACTACCACCAAAAAACGTTTATTACTATCGCTGCCCA
GACCACAGGAAGAACTATGTGATGTCCTTTGCATTCTGTTTTGACCGAGAAGATGATATCTACCAGTTTG
CTTACTGCTACCCTTATACATATACTCGCTTCCAGCATTACCTCGACAGCTTACAAAAGAAAAACATGGA
TTATTTCTTCCGGGAACAGCTTGGACAGAGTGTGCAACAGCGGCAGCTTGACCTCCTGACGATAACCAGC
CCGGAGAATCTCCGTGAAGGGTCAGAAAAGAAGGTGATATTCATCACAGGGCGAGTCCACCCAGGGGAAA
CGCCATCTTCATTTGTGTGCCAAGGAATCATCGACTTCCTTGTAAGTCAGCATCCAATTGCCCGTGTCCT
ACGAGAACATTTAGTCTTCAAGATTGCTCCAATGCTCAACCCTGATGGAGTTTACCTGGGCAACTACAGG
TGTTCCCTGATGGGGTTTGACCTGAATCGTCACTGGCTGGATCCCTCTCCATGGGCCCATCCCACCCTGC
ATGGAGTGAAACAGCTTATTATCAAGATGTACAATGACCCAAAAACAAGCCTGGAGTTCTATATTGACAT
CCACGCTCACTCCACCATGATGAATGGCTTCATGTACGGCAATATCTTTGAGGATGAGGAACGGTTCCAA
AGGCAGTCCATTTTTCCAAAACTCCTTTGCCAGAATGCCGAGGACTTCTCCTATACTAGCACATCCTTCA
ACAGGGATGCTGTGAAAGCAGGAACTGGCCGGCGCTTCCTGGGCGGGCTTCTGGACCACTCATCATACTG
CTATACCCTAGAGGTTTCCTTCTACAGCTACATCATTGGGGGTACTACAGCTGCAGTGCCCTACACTGAA
GAAGCCTATATGAAACTGGGACGGAACGTGGCAAGAACATTTCTAGATTATTACCGGCTGAACTCCCTGG
TTGAGAAGATAGCAGTCCCCATGCCAAGACTTCGGAAAGAAAAAGCCCCTCCTTGCAAGCACCCACCCCC
AAGGGGCTCAACCAGCAACGTCTCCATTGGCAAAGGGGACAAGAAGAACTCACTGAACCACAAAGACCCA
TCAACCCCCTTTTAA

Translation (494 aa):
MAERSQTAPEAGNDTGNEDAIGGNVNKYIVLPNGYSGQPKKGHLTFDACFESGNLGRVEQVSDFEYDLFI
RPDTCNPRFRVWFNFTVENVKELQRVIFNIVNFSKTKSLYRDGMAPMVKSTSRPKWQRLPPKNVYYYRCP
DHRKNYVMSFAFCFDREDDIYQFAYCYPYTYTRFQHYLDSLQKKNMDYFFREQLGQSVQQRQLDLLTITS
PENLREGSEKKVIFITGRVHPGETPSSFVCQGIIDFLVSQHPIARVLREHLVFKIAPMLNPDGVYLGNYR
CSLMGFDLNRHWLDPSPWAHPTLHGVKQLIIKMYNDPKTSLEFYIDIHAHSTMMNGFMYGNIFEDEERFQ
RQSIFPKLLCQNAEDFSYTSTSFNRDAVKAGTGRRFLGGLLDHSSYCYTLEVSFYSYIIGGTTAAVPYTE
EAYMKLGRNVARTFLDYYRLNSLVEKIAVPMPRLRKEKAPPCKHPPPRGSTSNVSIGKGDKKNSLNHKDP
STPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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