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Report for CCDS2780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2780.1 Public Homo sapiens 3 ARIH2 24 110 108 CCDS HistoryNCBI Gene:10425Re-query CCDS DB by CCDS ID:2780.1Re-query CCDS DB by GeneID:10425See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356401.9 ENSP00000348769.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356401.9Link to Ensembl Protein Viewer:ENSP00000348769.4Re-query CCDS DB by Nucleotide ID:ENST00000356401Re-query CCDS DB by Protein ID:ENSP00000348769
Original member Current member EBI ENST00000449376.5 ENSP00000403222.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449376.5Link to Ensembl Protein Viewer:ENSP00000403222.1Re-query CCDS DB by Nucleotide ID:ENST00000449376Re-query CCDS DB by Protein ID:ENSP00000403222
Original member Current member NCBI NM_001317333.2 NP_001304262.1 Accepted alive Link to Nucleotide Sequence:NM_001317333.2Link to Protein Sequence:NP_001304262.1Re-query CCDS DB by Nucleotide ID:NM_001317333Re-query CCDS DB by Protein ID:NP_001304262Link to BLAST:NP_001304262.1
Original member Current member NCBI NM_001349209.2 NP_001336138.1 Accepted alive Link to Nucleotide Sequence:NM_001349209.2Link to Protein Sequence:NP_001336138.1Re-query CCDS DB by Nucleotide ID:NM_001349209Re-query CCDS DB by Protein ID:NP_001336138Link to BLAST:NP_001336138.1
Original member Current member NCBI NM_001349210.2 NP_001336139.1 Accepted alive Link to Nucleotide Sequence:NM_001349210.2Link to Protein Sequence:NP_001336139.1Re-query CCDS DB by Nucleotide ID:NM_001349210Re-query CCDS DB by Protein ID:NP_001336139Link to BLAST:NP_001336139.1
Original member Current member NCBI NM_001349211.2 NP_001336140.1 Accepted alive Link to Nucleotide Sequence:NM_001349211.2Link to Protein Sequence:NP_001336140.1Re-query CCDS DB by Nucleotide ID:NM_001349211Re-query CCDS DB by Protein ID:NP_001336140Link to BLAST:NP_001336140.1
Original member Current member NCBI NM_006321.4 NP_006312.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006321.4Link to Protein Sequence:NP_006312.1Re-query CCDS DB by Nucleotide ID:NM_006321Re-query CCDS DB by Protein ID:NP_006312Link to BLAST:NP_006312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304262.1 493 O95376 493 100% 0 0
NP_001336138.1 493 O95376 493 100% 0 0
NP_001336139.1 493 O95376 493 100% 0 0
NP_001336140.1 493 O95376 493 100% 0 0
NP_006312.1 493 O95376 493 100% 0 0

Chromosomal Locations for CCDS 2780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48927559 48927813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48961612 48961679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48964919 48964982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48967125 48967275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48968534 48968655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48970595 48970704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48973699 48973816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48974817 48974867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48974958 48974979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48979482 48979633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48980353 48980496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48981660 48981728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48982896 48982979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48983199 48983270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTCAGTGGACATGAATAGCCAGGGGTCTGACAGCAATGAAGAGGACTATGACCCAAATTGTGAGGAAG
AGGAAGAAGAAGAAGAAGACGACCCTGGGGACATAGAGGACTATTACGTGGGAGTAGCCAGCGATGTGGA
GCAGCAGGGGGCTGATGCCTTTGATCCCGAGGAGTACCAGTTCACTTGCTTGACCTACAAGGAATCTGAG
GGTGCCCTCAATGAGCACATGACCAGCTTAGCTTCTGTCCTAAAGGTATCTCATTCAGTTGCTAAACTTA
TATTAGTTAATTTCCACTGGCAAGTTTCAGAGATATTGGACAGATACAAGTCCAATTCTGCTCAACTGCT
TGTTGAGGCTCGAGTTCAGCCTAATCCATCAAAACATGTTCCCACATCCCATCCCCCTCACCACTGTGCA
GTGTGTATGCAGTTTGTGCGAAAGGAAAACCTACTCTCTCTGGCCTGTCAGCACCAGTTTTGCCGCAGCT
GCTGGGAGCAGCACTGCTCAGTTCTCGTCAAGGACGGCGTGGGCGTGGGAGTCTCTTGCATGGCTCAGGA
CTGTCCACTCCGTACACCAGAGGACTTTGTGTTTCCATTGCTTCCCAATGAAGAATTGAGAGAGAAATAC
AGGCGCTACCTCTTCAGGGACTATGTGGAGAGTCATTACCAGCTCCAGCTGTGCCCTGGTGCAGACTGCC
CCATGGTTATTCGGGTACAGGAGCCTAGAGCTCGCCGAGTACAGTGCAATCGGTGCAACGAGGTCTTCTG
TTTCAAGTGTCGTCAGATGTATCACGCACCCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT
GCAGACGACTCTGAAACAGCCAACTACATTAGTGCTCACACTAAAGACTGTCCCAAGTGCAACATCTGCA
TTGAGAAGAATGGAGGCTGCAATCACATGCAATGCTCCAAATGTAAACACGACTTCTGCTGGATGTGTCT
AGGAGATTGGAAGACTCATGGCAGTGAATACTATGAGTGCAGTCGTTACAAGGAGAATCCTGACATCGTG
AACCAGAGCCAACAAGCCCAGGCGAGGGAAGCCCTCAAGAAGTACTTATTCTACTTTGAGAGGTGGGAAA
ACCACAATAAAAGCTTGCAGCTAGAGGCACAGACATACCAGCGGATTCACGAGAAGATTCAGGAGAGGGT
CATGAACAATCTGGGGACATGGATCGACTGGCAGTACCTACAGAATGCTGCCAAGCTCTTGGCCAAGTGT
CGATACACCCTGCAATACACCTACCCATATGCATATTACATGGAGTCCGGACCCAGGAAGAAGCTGTTTG
AATACCAGCAGGCTCAGCTGGAGGCTGAGATCGAAAACCTCTCATGGAAAGTGGAGCGTGCAGACAGCTA
TGACAGAGGGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTGCTGAAAGATTTC
CATGACACCTAA

Translation (493 aa):
MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQFTCLTYKESE
GALNEHMTSLASVLKVSHSVAKLILVNFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCA
VCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKY
RRYLFRDYVESHYQLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKC
ADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIV
NQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKC
RYTLQYTYPYAYYMESGPRKKLFEYQQAQLEAEIENLSWKVERADSYDRGDLENQMHIAEQRRRTLLKDF
HDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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