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Report for CCDS29275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29275.1 Public Mus musculus 18 Arsi 23 108 98 CCDS HistoryNCBI Gene:545260Re-query CCDS DB by CCDS ID:29275.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040359.5 ENSMUSP00000043966.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040359.5Link to Ensembl Protein Viewer:ENSMUSP00000043966.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040359Re-query CCDS DB by Protein ID:ENSMUSP00000043966
Original member Current member NCBI NM_001038499.2 NP_001033588.1 Accepted alive Link to Nucleotide Sequence:NM_001038499.2Link to Protein Sequence:NP_001033588.1Re-query CCDS DB by Nucleotide ID:NM_001038499Re-query CCDS DB by Protein ID:NP_001033588Link to BLAST:NP_001033588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033588.1 573 Q32KI9 573 100% 0 0

Chromosomal Locations for CCDS 29275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60912240 60912550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60916358 60917768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGCATGCTCTCTCAGGATTCTCCCTGGTCAGCCTACTCAGCTTGGGCTACCTGTCCTGGGATTGGGCTA
AGCCCGGCCTTGTGGCTGATGGGCCTGCCGAGGCTGGCGATCAGCCTTCGGTGGCTCCACCGCAGCCTCC
ACACATTATCTTCATCCTCACCGACGACCAAGGGTACCACGACGTGGGATACCATGGCTCGGATATCGAG
ACCCCAACGCTGGACCGGCTAGCAGCTGAGGGCGTCAAACTGGAGAATTATTACATCCAGCCCATATGTA
CACCTTCGAGGAGTCAACTCCTCACCGGCAGGTACCAGATCCATACAGGATTGCAGCACTCCATTATCCG
CCCACGGCAGCCCAACTGTCTGCCCCTGGACCAGGTGACGCTGCCCCAGAAGCTACAGGAGGCAGGCTAC
TCCACCCACATGGTGGGCAAGTGGCATCTGGGCTTCTACCGGAAGGAGTGCTTGCCTACCCGCCGGGGCT
TCGACACCTTCCTGGGTTCCCTCACAGGCAATGTGGATTACTACACCTACGACAACTGTGATGGCCCAGG
GGTTTGTGGGTTTGACCTGCACGAGGGTGAGAGCGTGGCCTGGGGGCTCAGCGGCCAGTACTCCACTATG
CTCTACGCTCAGCGTGCAAGCCACATCCTGGCCAGCCACAATCCCCAGAATCCCCTCTTTCTCTATGTGG
CCTTCCAGGCAGTACACACGCCCCTACAGTCACCTCGAGAATACCTATACCGCTACCGCACGATGGGCAA
CGTAGCACGGCGCAAGTACGCAGCCATGGTGACCTGCATGGACGAGGCTGTGCGTAACATCACCTGGGCC
CTCAAGCGCTATGGTTTCTATAACAACAGTGTCATTATCTTCTCCAGTGACAATGGTGGCCAGACCTTCT
CAGGGGGTAGCAACTGGCCCCTTCGAGGACGCAAGGGTACTTACTGGGAAGGTGGTGTGAGGGGCCTGGG
TTTTGTCCACAGCCCACTGCTCAAGAAAAAGAGACGGACCAGTCGGGCCCTGGTCCATATCACAGACTGG
TACCCAACACTGGTGGGTCTGGCAGGCGGTACTACATCAGCAGCTGATGGGCTGGATGGCTATGATGTAT
GGCCAGCCATTAGTGAGGGCCGGGCCTCACCACGCACAGAGATCCTACACAACATCGACCCCCTCTACAA
CCATGCCCGGCATGGATCCTTGGAGGGTGGCTTTGGGATCTGGAATACAGCAGTGCAGGCTGCTATCCGA
GTTGGGGAGTGGAAGCTGCTCACTGGAGACCCAGGCTATGGTGACTGGATTCCACCTCAGACACTGGCCT
CCTTCCCTGGCAGCTGGTGGAACCTGGAGCGGATGGCCAGCATCCGCCAGGCTGTGTGGCTCTTTAACAT
CAGTGCTGACCCTTACGAACGAGAGGACCTGGCTGGCCAGCGACCCGATGTAGTCCGCACCCTTCTGGCT
CGCCTGGCTGATTATAACCGTACTGCCATCCCCGTGCGTTACCCAGCTGCGAACCCTCGGGCCCATCCTG
ACTTTAATGGGGGTGCTTGGGGGCCCTGGGCCAGTGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGA
AGGCAGAGCTAGAAGTTTCTCCCGGGGTCGCCGCAAGAAGAAATGCAAGATTTGCAAGCTTCGATCTTTT
TTCCGTAAACTCAATACCAGGCTGATGTCCCACCGGATCTGA

Translation (573 aa):
MHALSGFSLVSLLSLGYLSWDWAKPGLVADGPAEAGDQPSVAPPQPPHIIFILTDDQGYHDVGYHGSDIE
TPTLDRLAAEGVKLENYYIQPICTPSRSQLLTGRYQIHTGLQHSIIRPRQPNCLPLDQVTLPQKLQEAGY
STHMVGKWHLGFYRKECLPTRRGFDTFLGSLTGNVDYYTYDNCDGPGVCGFDLHEGESVAWGLSGQYSTM
LYAQRASHILASHNPQNPLFLYVAFQAVHTPLQSPREYLYRYRTMGNVARRKYAAMVTCMDEAVRNITWA
LKRYGFYNNSVIIFSSDNGGQTFSGGSNWPLRGRKGTYWEGGVRGLGFVHSPLLKKKRRTSRALVHITDW
YPTLVGLAGGTTSAADGLDGYDVWPAISEGRASPRTEILHNIDPLYNHARHGSLEGGFGIWNTAVQAAIR
VGEWKLLTGDPGYGDWIPPQTLASFPGSWWNLERMASIRQAVWLFNISADPYEREDLAGQRPDVVRTLLA
RLADYNRTAIPVRYPAANPRAHPDFNGGAWGPWASEEEEEEEEEEEEGRARSFSRGRRKKKCKICKLRSF
FRKLNTRLMSHRI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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