NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS64891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64891.1 Public Homo sapiens 8 SPIDR 24 110 108 CCDS HistoryNCBI Gene:23514Re-query CCDS DB by CCDS ID:64891.1Re-query CCDS DB by GeneID:23514See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 64891.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541342.2 ENSP00000444061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541342.2Link to Ensembl Protein Viewer:ENSP00000444061.1Re-query CCDS DB by Nucleotide ID:ENST00000541342Re-query CCDS DB by Protein ID:ENSP00000444061
Original member Current member NCBI NM_001282916.1 NP_001269845.1 Accepted alive Link to Nucleotide Sequence:NM_001282916.1Link to Protein Sequence:NP_001269845.1Re-query CCDS DB by Nucleotide ID:NM_001282916Re-query CCDS DB by Protein ID:NP_001269845Link to BLAST:NP_001269845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269845.1 845 Q14159-2 845 100% 0 0

Chromosomal Locations for CCDS 64891.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47279972 47280017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47291033 47291137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47293867 47294030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47396376 47396626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47407861 47407961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47440323 47440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47595811 47596006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47598946 47599196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47673801 47673941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47700403 47700490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701721 47701864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701956 47702015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47712662 47712872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47713489 47713641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47727200 47727293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47728933 47729047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47729412 47729465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47735307 47735450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGGCTCAGGTGTGGAGAAGGGTTTCAGAACACTTCTGGGAATCCGAAACCACCACATCTAAAAGCACCA
GTGGGCTTACAGACATAACATGGAGCTCCAGTGGAAGTGATTTGTCGGATGAAGATAAGACACTTTCTCA
GTTACAGAGAGATGAATTACAGTTTATCGACTGGGAGATTGACAGTGACAGGGCAGAGGCTAGTGACTGT
GATGAATTTGAAGATGACGAGGGTGCTGTGGAAATCTCAGACTGTGCTTCTTGTGCAAGTAATCAGTCTT
TGACAAGTGATGAGAAGCTGTCGGAGCTTCCCAAGCCAAGTTCTATAGAAATTTTAGAGTATTCATCAGA
TAGTGAAAAAGAAGATGATTTGGAAAATGTCCTACTCATTGATTCAGAATCCCCTCACAAATACCACGTG
CAGTTTGCATCGGATGCAAGACAGATTATGGAGAGACTGATAGATCCAAGGACAAAATCAACAGAGACCA
TTTTGCATACACCTCAGAAACCCACAGCTAAGTTTCCCAGGACTCCAGAAAATTCAGCAAAGAAGAAGCT
TTTAAGAGGTGGACTAGCAGAAAGACTAAATGGACTGCAGAATCGAGAGAGATCTGCTATTTCTTTGTGG
AGACATCAATGTATTTCTTACCAAAAGACACTTTCAGGTAGAAAATCTGGTGTATTAACTGTGAAAATTT
TAGAGCTGCATGAGGAATGTGCCATGCAAGTTGCCATGTGTGAGCAGTTATTGGGGTCACCAGCCACCAG
CTCCTCCCAAAGTGTGGCTCCCAGGCCTGGAGCTGGCCTGAAAGTTCTCTTCACCAAGGAGACTGCAGGC
TACCTCAGGGGCCGTCCCCAGGACACTGTCCGGATCTTCCCTCCCTGGCAAAAACTGATTATTCCAAGTG
GAAGTTGCCCTGTTATTCTGAATACTTACTTTTGTGAGAAAGTTGTTGCCAAAGAAGATTCAGAAAAAAC
TTGTGAAGTGTACTGTCCGGACATACCCCTTCCAAGAAGAAGCATCTCTTTGGCCCAGATGTTTGTAATT
AAGGGTCTAACAAATAATTCACCTGAAATCCAGGTTGTGTGTAGTGGTGTAGCCACTACAGGGACAGCCT
GGACCCATGGGCACAAAGAAGCAAAACAGCGCATCCCAACCAGCACTCCCCTGAGGGATTCTCTCCTGGA
TGTGGTGGAAAGCCAGGGAGCTGCCTCGTGGCCAGGAGCTGGAGTCCGAGTGGTGGTGCAAAGAGTGTAT
TCTCTTCCCAGCAGAGACAGCACCAGGGGTCAGCAGGGGGCCAGCTCAGGACACACAGACCCAGCTGGAA
CTCGAGCCTGCCTTCTGGTACAAGATGCCTGTGGAATGTTCGGTGAAGTGCACTTGGAGTTCACCATGTC
GAAGGCAAGACAGTTGGAAGGGAAGTCTTGCAGCCTGGTGGGAATGAAGGTTCTACAGAAAGTCACCAGA
GGAAGGACAGCGGGGATTTTCAGTTTGATTGACACCCTGTGGCCCCCAGCGATACCTCTGAAAACACCTG
GCCGCGACCAGCCCTGTGAAGAGATAAAAACTCATCTGCCTCCTCCAGCCTTGTGTTACATCCTCACAGC
TCATCCAAATCTGGGACAAATTGATATAATTGACGAAGACCCCATTTATAAGCTTTACCAGCCTCCAGTT
ACCCGCTGCTTAAGAGACATTCTCCAGATGAATGATCTTGGTACCCGTTGCAGTTTCTATGCCACGGTGA
TTTACCAAAAACCACAGCTGAAGAGTCTGCTGCTTCTGGAGCAAAGGGAGATCTGGCTGCTAGTGACCGA
TGTCACTCTGCAAACGAAGGAGGAGAGAGACCCCAGGCTCCCCAAAACCCTGCTGGTCTATGTGGCCCCC
TTGTGTGTGCTGGGCTCTGAAGTCCTGGAGGCACTCGCTGGGGCTGCCCCTCACAGCCTCTTCTTCAAGG
ACGCTCTCCGTGACCAGGGTCGGATTGTTTGTGCTGAACGAACTGTCCTCTTGCTTCAGAAGCCCCTTTT
GAGTGTGGTCTCTGGTGCAAGTTCCTGTGAGCTGCCTGGCCCGGTGATGCTCGACAGCCTGGACTCTGCA
ACACCTGTCAACTCCATCTGCAGTGTTCAAGGCACTGTGGTTGGCGTGGACGAGAGCACTGCTTTCTCAT
GGCCTGTGTGTGACATGTGTGGCAACGGGAGATTGGAACAGAGGCCGGAAGACAGAGGCGCCTTTTCCTG
TGGGGACTGCTCCCGGGTGGTCACATCTCCTGTTCTCAAGAGGCACCTGCAGGTCTTCCTGGACTGCCGC
TCAAGACCGCAGTGCAGAGTGAAGGTCAAGCTGTTGCAGCGCAGCATTTCCTCCCTGCTGAGGTTTGCCG
CCGGTGAAGATGGGAGCTACGAAGTGAAGAGTGTCCTCGGAAAGGAAGTGGGGTTGTTAAATTGTTTTGT
CCAGTCCGTAACCGCCCACCCGACCAGCTGCATTGGATTGGAGGAAATCGAGCTTCTGAGTGCAGGAGGG
GCCTCTGCAGAACACTAG

Translation (845 aa):
MAQVWRRVSEHFWESETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDC
DEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLIDSESPHKYHV
QFASDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQNRERSAISLW
RHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAG
YLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRRSISLAQMFVI
KGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGAGVRVVVQRVY
SLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLVGMKVLQKVTR
GRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDEDPIYKLYQPPV
TRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRLPKTLLVYVAP
LCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPGPVMLDSLDSA
TPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLKRHLQVFLDCR
SRPQCRVKVKLLQRSISSLLRFAAGEDGSYEVKSVLGKEVGLLNCFVQSVTAHPTSCIGLEEIELLSAGG
ASAEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH