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Report for CCDS584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
584.1 Public Homo sapiens 1 YIPF1 24 110 108 CCDS HistoryNCBI Gene:54432Re-query CCDS DB by CCDS ID:584.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 584.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000072644.7 ENSP00000072644.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000072644.7Link to Ensembl Protein Viewer:ENSP00000072644.1Re-query CCDS DB by Nucleotide ID:ENST00000072644Re-query CCDS DB by Protein ID:ENSP00000072644
Original member Current member EBI ENST00000464950.6 ENSP00000432266.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464950.6Link to Ensembl Protein Viewer:ENSP00000432266.1Re-query CCDS DB by Nucleotide ID:ENST00000464950Re-query CCDS DB by Protein ID:ENSP00000432266
Original member Current member NCBI NM_018982.5 NP_061855.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018982.5Link to Protein Sequence:NP_061855.1Re-query CCDS DB by Nucleotide ID:NM_018982Re-query CCDS DB by Protein ID:NP_061855Link to BLAST:NP_061855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061855.1 306 Q9Y548-1 306 100% 0 0

Chromosomal Locations for CCDS 584.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53860064 53860153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53866200 53866382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53866758 53866924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53871372 53871488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53878315 53878402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53878642 53878722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53883113 53883276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53888907 53888937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCAGCAGTAGATGACTTGCAATTTGAAGAATTTGGCAATGCAGCCACTTCTCTGACAGCAAACCCAG
ATGCCACCACAGTAAACATTGAGGATCCTGGTGAAACCCCAAAACATCAGCCAGGATCCCCAAGAGGCTC
AGGAAGAGAAGAAGATGATGAGTTACTGGGAAATGATGACTCTGACAAAACTGAGTTACTTGCTGGACAG
AAGAAAAGCTCCCCCTTCTGGACATTTGAATACTACCAAACATTCTTTGATGTGGACACCTACCAGGTCT
TTGACAGAATTAAAGGATCTCTTTTGCCAATACCCGGGAAAAACTTTGTGAGGTTATATATCCGCAGCAA
TCCAGATCTCTATGGCCCCTTTTGGATATGTGCCACGTTGGTCTTTGCCATAGCAATTAGTGGGAATCTT
TCCAACTTCTTGATCCATCTGGGAGAGAAGACGTACCATTATGTGCCCGAATTCCGAAAAGTGTCCATAG
CAGCTACCATCATCTATGCCTATGCCTGGCTGGTTCCTCTTGCACTCTGGGGTTTCCTCATGTGGAGAAA
CAGCAAAGTTATGAACATCGTCTCCTATTCATTTCTGGAGATTGTGTGTGTCTATGGATATTCCCTCTTC
ATTTATATCCCCACCGCAATACTGTGGATTATCCCCCAGAAAGCTGTTCGTTGGATTCTAGTCATGATTG
CCCTGGGCATCTCAGGATCTCTCTTGGCAATGACATTTTGGCCAGCTGTTCGTGAGGATAACCGACGCGT
TGCATTGGCCACAATTGTGACAATTGTGTTGCTCCATATGCTGCTTTCTGTGGGCTGCTTGGCATACTTT
TTTGATGCACCAGAGATGGACCATCTCCCAACAACTACAGCTACTCCAAACCAAACAGTTGCTGCAGCCA
AGTCCAGCTAA

Translation (306 aa):
MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDDSDKTELLAGQ
KKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNL
SNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLF
IYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYF
FDAPEMDHLPTTTATPNQTVAAAKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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