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Report for CCDS23057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23057.1 Public Mus musculus 9 Or10d1b 23 108 98 CCDS HistoryNCBI Gene:235256Re-query CCDS DB by CCDS ID:23057.1Re-query CCDS DB by GeneID:235256See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082027.2 ENSMUSP00000080686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082027.2Link to Ensembl Protein Viewer:ENSMUSP00000080686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000082027Re-query CCDS DB by Protein ID:ENSMUSP00000080686
Original member Current member EBI ENSMUST00000215192.1 ENSMUSP00000149664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215192.1Link to Ensembl Protein Viewer:ENSMUSP00000149664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215192Re-query CCDS DB by Protein ID:ENSMUSP00000149664
Original member Current member NCBI NM_207138.1 NP_997021.1 Accepted alive Link to Nucleotide Sequence:NM_207138.1Link to Protein Sequence:NP_997021.1Re-query CCDS DB by Nucleotide ID:NM_207138Re-query CCDS DB by Protein ID:NP_997021Link to BLAST:NP_997021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997021.1 311 Q60888 311 100% 0 0

Chromosomal Locations for CCDS 23057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39701832 39702767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAGAACCTTTCAGTAGTGACTCAGTTTATCCTACTGGGCATCCCACACACAGAGGGTGTGGAGACCA
TGCTCTTTGTCCTGTTTTTTTCTTTCTACATCTTCACTCTCGTGGGGAACTTGCTCATACTCCTTGCAAT
TGTCTCCTCCAGTCGGCTTCACACTCCCATGTACTTCTTCCTGTGCCAGCTGTCAGTGTGTGACATATTT
TTCCCGTCTGTGAGTTCTCCCAAGATGCTGTTCTACCTCTCAGGAAATACTCCAGCCATCTCCTATGCAG
GTTGTGTGTCCCAGCTCTTCTTCTATCATTTCCTGGGTGGTACTGAGTGTTTCCTGTACACAGTGATGGC
TTATGACCGTTTTGTTGCCATATGCTACCCTCTACGCTACTCAGTCATAATGAGTCATAGAATTTGTGCC
TTCCTGGCCATGGGGACAGCAGTTTTCGGCTGTATTCATTCCACCTTTCTAACTACTCTCACCTTCCAGT
TGCCCTACTGTGGCCCCAAAGATGTGAACTATTACTTCTGTGATATTCCTGTGGTGATGAAGCTGGCTTG
TGCAGACACATCGACCCTGGAGATGGTAGGGTTCATCAGTGTGGGTCTCATGCCCCTCAGTTGCTTCTTC
TTCATCCTCACCTCCTACAGCTGTATAGTTCGGTCCATCCTACAGATCCGCTCCACTGAGGGTCGACATA
GAGCCTTCTCCACCTGCAGTGCCCATTTTACTGCCATTTTGCTCTTTTACATGCCAGTGATTTTCATTTA
TCTAAGGCCAACACCAAGTCCTTGGTTGGATGCAACTGTTCAGATTCTGAACAATCTGGTCACCCCTATG
CTAAATCCGTTAATTTACAGTCTTAGGAATAAGGAGGTGAAATCATCACTGTGGACTGTCCTACATCTGC
TGTGCTTCCTTCCCAAGCATTTGTAA

Translation (311 aa):
MKNLSVVTQFILLGIPHTEGVETMLFVLFFSFYIFTLVGNLLILLAIVSSSRLHTPMYFFLCQLSVCDIF
FPSVSSPKMLFYLSGNTPAISYAGCVSQLFFYHFLGGTECFLYTVMAYDRFVAICYPLRYSVIMSHRICA
FLAMGTAVFGCIHSTFLTTLTFQLPYCGPKDVNYYFCDIPVVMKLACADTSTLEMVGFISVGLMPLSCFF
FILTSYSCIVRSILQIRSTEGRHRAFSTCSAHFTAILLFYMPVIFIYLRPTPSPWLDATVQILNNLVTPM
LNPLIYSLRNKEVKSSLWTVLHLLCFLPKHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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