NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24255.1 Public Mus musculus 10 Rdh7 23 108 98 CCDS HistoryNCBI Gene:54150Re-query CCDS DB by CCDS ID:24255.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047199.4 ENSMUSP00000039252.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047199.4Link to Ensembl Protein Viewer:ENSMUSP00000039252.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047199Re-query CCDS DB by Protein ID:ENSMUSP00000039252
Original member Current member NCBI NM_001150749.1 NP_001144221.1 Accepted alive Link to Nucleotide Sequence:NM_001150749.1Link to Protein Sequence:NP_001144221.1Re-query CCDS DB by Nucleotide ID:NM_001150749Re-query CCDS DB by Protein ID:NP_001144221Link to BLAST:NP_001144221.1
Original member Current member NCBI NM_017473.4 NP_059501.1 Accepted alive Link to Nucleotide Sequence:NM_017473.4Link to Protein Sequence:NP_059501.1Re-query CCDS DB by Nucleotide ID:NM_017473Re-query CCDS DB by Protein ID:NP_059501Link to BLAST:NP_059501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001144221.1 316 O88451 316 100% 0 0
NP_059501.1 316 O88451 316 100% 0 0

Chromosomal Locations for CCDS 24255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127884551 127884768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127885673 127885836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127887416 127887671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127888301 127888613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTGGCTCTACCTGGTTGCACTGGTGGGCCTGTGGACGCTCCTGCGCTTCTTCAGGGAGAGGCAGGTGG
TGAGCCATCTCCAAGACAAGTATGTCTTCATCACGGGCTGTGACTCTGGCTTTGGGAACCTTCTGGCCAG
ACAGCTGGACAGGAGAGGCATGAGGGTGCTAGCTGCATGTCTGACGGAGAAGGGAGCTGAGCAGCTGAGG
AACAAGACATCTGACAGGCTGGAGACAGTGATCCTGGATGTCACCAAGACAGAGAGTATTGTGGCAGCCA
CTCAGTGGGTGAAGGAGCGTGTTGGGAACAGAGGACTCTGGGGCCTGGTCAACAATGCTGGCATCTGTGT
CTTTGCTATCAATGAGTGGCTGAAAAAAGAGGACTTTGCAAATATACTGGATGTGAACCTGTTGGGCATG
ATCGAGGTGACTCTGAGCATGCTGCCCTTAGTGAGGAAGGCGAGGGGCCGTGTGGTCAACATCTCCAGCT
CCATGGGTCGAGTGTCTTTGTGTGGTGGTGGTTACTGCATCTCCAAGTATGGTGTAGAGGCCTTCTCAGA
CTCCCTCAGGAGGGAGATCTCCTATTTTGGGGTGAAGGTGGCTATCATAGAGCCTGGCGGGTTCAGGACT
AATGTCTCCAACTACGAGAGGCTATCACACAGCATAGAGAAGCTGTGGGACCAGACATCCTCGGAGGTCA
AGGAGGTCTATGACAAGAATTTTCTGGACTCCTATATCAAAGCAATACAGTCATTGACAGACACATGCTC
AGATGACCTGTCTGTGGTAACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACAAGATAC
TCAGCTGGCTGGGATGCCAAGCTCTTCTACCTACCCTTGAGCTACATGCCCACCTTCCTGGTAGATGCCA
TGTTGTACTGGAGCTCTGTAAAGCCTGCCCAAGCCCTGTGA

Translation (316 aa):
MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKGAEQLR
NKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGICVFAINEWLKKEDFANILDVNLLGM
IEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISKYGVEAFSDSLRREISYFGVKVAIIEPGGFRT
NVSNYERLSHSIEKLWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLSVVTDCMEHALTACHPRTRY
SAGWDAKLFYLPLSYMPTFLVDAMLYWSSVKPAQAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH