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Report for CCDS37571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37571.1 Public Mus musculus 17 Rps28 23 108 98 CCDS HistoryNCBI Gene:54127Re-query CCDS DB by CCDS ID:37571.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087342.12 ENSMUSP00000110013.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087342.12Link to Ensembl Protein Viewer:ENSMUSP00000110013.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087342Re-query CCDS DB by Protein ID:ENSMUSP00000110013
Original member Current member EBI ENSMUST00000173844.7 ENSMUSP00000133357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173844.7Link to Ensembl Protein Viewer:ENSMUSP00000133357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173844Re-query CCDS DB by Protein ID:ENSMUSP00000133357
Original member Current member EBI ENSMUST00000166693.2 ENSMUSP00000133642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166693.2Link to Ensembl Protein Viewer:ENSMUSP00000133642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166693Re-query CCDS DB by Protein ID:ENSMUSP00000133642
Original member Current member EBI ENSMUST00000173019.7 ENSMUSP00000134615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173019.7Link to Ensembl Protein Viewer:ENSMUSP00000134615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173019Re-query CCDS DB by Protein ID:ENSMUSP00000134615
Original member Current member NCBI NM_001355384.1 NP_001342313.1 Accepted alive Link to Nucleotide Sequence:NM_001355384.1Link to Protein Sequence:NP_001342313.1Re-query CCDS DB by Nucleotide ID:NM_001355384Re-query CCDS DB by Protein ID:NP_001342313Link to BLAST:NP_001342313.1
Original member Current member NCBI NM_016844.3 NP_058540.1 Accepted alive Link to Nucleotide Sequence:NM_016844.3Link to Protein Sequence:NP_058540.1Re-query CCDS DB by Nucleotide ID:NM_016844Re-query CCDS DB by Protein ID:NP_058540Link to BLAST:NP_058540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342313.1 69 P62858 69 100% 0 0
NP_058540.1 69 P62858 69 100% 0 0

Chromosomal Locations for CCDS 37571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33823208 33823330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33824299 33824346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33824434 33824472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (210 nt):
ATGGACACGAGTCGCGTGCAGCCCATCAAGCTGGCTAGGGTAACCAAAGTGCTGGGCAGGACCGGTTCGC
AGGGACAGTGCACGCAGGTGCGAGTGGAATTCATGGATGACACCAGCCGCTCTATCATCCGAAATGTCAA
AGGCCCCGTTCGAGAGGGTGACGTGCTCACCCTATTGGAGTCAGAAAGAGAAGCTCGAAGGTTGCGTTAA

Translation (69 aa):
MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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