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Report for CCDS17598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17598.1 Public Mus musculus 3 Rfx5 23 108 98 CCDS HistoryNCBI Gene:53970Re-query CCDS DB by CCDS ID:17598.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029772.2 ENSMUSP00000029772.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029772.2Link to Ensembl Protein Viewer:ENSMUSP00000029772.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029772Re-query CCDS DB by Protein ID:ENSMUSP00000029772
Original member Current member EBI ENSMUST00000107255.7 ENSMUSP00000102876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107255.7Link to Ensembl Protein Viewer:ENSMUSP00000102876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107255Re-query CCDS DB by Protein ID:ENSMUSP00000102876
Original member Current member EBI ENSMUST00000107260.8 ENSMUSP00000102881.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107260.8Link to Ensembl Protein Viewer:ENSMUSP00000102881.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107260Re-query CCDS DB by Protein ID:ENSMUSP00000102881
Original member Current member EBI ENSMUST00000137088.7 ENSMUSP00000117963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137088.7Link to Ensembl Protein Viewer:ENSMUSP00000117963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137088Re-query CCDS DB by Protein ID:ENSMUSP00000117963
Original member NCBI NM_001355705.1 NP_001342634.1 Updated not alive Link to Nucleotide Sequence:NM_001355705.1Link to Protein Sequence:NP_001342634.1Re-query CCDS DB by Nucleotide ID:NM_001355705Re-query CCDS DB by Protein ID:NP_001342634
Current member NCBI NM_001355705.2 NP_001342634.1 Accepted alive Link to Nucleotide Sequence:NM_001355705.2Link to Protein Sequence:NP_001342634.1Re-query CCDS DB by Nucleotide ID:NM_001355705Re-query CCDS DB by Protein ID:NP_001342634Link to BLAST:NP_001342634.1
Original member NCBI NM_017395.3 NP_059091.2 Updated not alive Link to Nucleotide Sequence:NM_017395.3Link to Protein Sequence:NP_059091.2Re-query CCDS DB by Nucleotide ID:NM_017395Re-query CCDS DB by Protein ID:NP_059091
Current member NCBI NM_017395.4 NP_059091.2 Accepted alive Link to Nucleotide Sequence:NM_017395.4Link to Protein Sequence:NP_059091.2Re-query CCDS DB by Nucleotide ID:NM_017395Re-query CCDS DB by Protein ID:NP_059091Link to BLAST:NP_059091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342634.1 658 Q9JL61 658 100% 0 0
NP_059091.2 658 Q9JL61 658 100% 0 0

Chromosomal Locations for CCDS 17598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94955034 94955146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94955352 94955385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94955746 94955828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94956272 94956391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94956487 94956606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94956721 94956802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94957097 94957298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94957782 94957885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94958250 94959368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGCAGAAGATAAACCTGATGCTAAGAGCCCCAAGACTGGGGCAAGGCCCCAAGGTGGTGCTGACGCTG
GAGAACCTACCACCCTCCTCCAAAGGCTCCGAGGTACCATTTCCAAGGCCGTGCAGAACAAAGTAGAGGG
AATTCTGCAAGAAGTACAGAAATTCTCGGACAACGACAAGCTGTACCTCTACCTTCAGCTCCCATCGGGG
CCCAGCGTTGGCGAGAAGAGCTCAGAGCCAAGTCTGCTCAGCAATGAGGAGTATATGTATGCCTATAGGT
GGATCCGCAACCACCTGGAAGAGCACATGGATACCTGCCTGCCAAAGCAGAGCGTCTATGATGCCTATCG
AAAGTACTGCGAGAGCCTCGCCTGTTGCCGCCCGCTCAGCACAGCCAACTTCGGTAAAATCATCAGAGAG
ATCTTCCCTGACATCAAGGCCCGAAGACTCGGTGGCCGGGGCCAGTCCAAATATTGCTACAGTGGCATTC
GAAGGAAGACCTTGGTATCCATGCCACCATTGCCTGGACTCGACTTGAAGGGATCTGAAAGTCCAGAAAT
GGGCCCAGAAGTAAGCCCAGCACCTCGGGATGAACTGGTAGAAGCAGCCTGTGCCCTGACTTGTGACTGG
GCAGAGCGGATCCTGAAGCGGTCCTTCAGTTCCATCGTCCAGGTCGCCCGCTACCTCCTGCAGCAGCATC
TCATCTCTGCCCGGTCGGCACATGCTCATGTGCTTAAGGCCGGGGGGCTTGCTGAAGAGGATGAAAGAGC
CCCTCGAGAACGGTCATTATGTAAGTCCAAGAATGTCGTAGAAAGCCTGGAAGGGGGAGGCCCTAAGAAA
CCAGAGAGACCGGCCCAGCCTCCTAAAGAGCAAGAAGCCCGAGCTGGGACAGACCTTCCAGGGCGTGCAG
AACGGAAGAAGAGTGTAATTGACAGCTCGGTTCCAGCAGCCAGTAAGCCACAAGTTAATGCTCTTGTGGC
CCGACTGCCTGTGCTGCTTCCAAGAGCACCACGATCACTTATCACACCCATTTCAGGCACTCTGAAAGTA
GCTACGCTGCCTCTACCCACTAGGGTTGGAGGGCCCCAGACAGCTGTGCCCATCATCAACATGATCTTAC
CACCTGTTCCTACTTTGTCAGGGGCTGGGCCTGGGCCTGGGCCTGGCCTTGGGCCTAGGTTTGGGCCAGG
GCCTGGGCTTGGGCCTGGGCCGGGGCCTGGTCTGGGGGCTGGTCTGGGGCCTGGGTTAGGGCCTGGGCTT
GGAGCTGGACCAGGGCCCGGGCTTGGAGCTGGGCTTGGGGCTGGCCTAGGGCTTGGGCCTGGGCGAGTTC
CACCTAGAGCACCCATTCTGCCTCGAGGTGCAGAGAACAGGGAGGTAGGCATAAGTAGTGATCCAAGACC
TCATGACAAGGGTATCAAAAGGACAGCTGAAGTGCCTCTGAGTGAGGCCAGTGGGCAGGACCCACCAGTT
AAAGAAATGAAGCACGAAACACAGGATACTACAGTAAGTGAAGCAAAAAGGAAGCGAGGACGCCCTCGAA
AGAAGCCAGGAGGGAGTGGGGAAAGAAACGCTACTCCTGAGAAGTCTGCAGCTATTGTGAACTCTCCCCG
ATCCCCAAGGCTACTCTGGGAGACATGGGGCTCAAAAAGAGAAAACAACTTCATTGGGAGACCAGAAGGA
CCAGGGCCAGGGGGTGAGGCTGAGCGGGAAACAGTGCTTGTGCAAGGTCAGCAAGATGGTGCTGTTTCCA
AAGGAGAAAGGAGCTTGAGTTCCCAGGAAGCCAAAGAAGCAGAAGATAAAATTCCTCCTGTCACTTCAAA
AGTGAGTGTTATCAAGGGCAGAATTCAAAAAGAGGCTCTTCAGTTGGTAAAGGGAGAGGCTGATGCTGCA
ACACAGGGCAACAAAGGGTTAAAGGGTCGTGTACTTCAAAGTTCCCTAACCCCTGAGCATAAAGACCCCA
AAGCAACACCCCCATGA

Translation (658 aa):
MAEDKPDAKSPKTGARPQGGADAGEPTTLLQRLRGTISKAVQNKVEGILQEVQKFSDNDKLYLYLQLPSG
PSVGEKSSEPSLLSNEEYMYAYRWIRNHLEEHMDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIRE
IFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVSPAPRDELVEAACALTCDW
AERILKRSFSSIVQVARYLLQQHLISARSAHAHVLKAGGLAEEDERAPRERSLCKSKNVVESLEGGGPKK
PERPAQPPKEQEARAGTDLPGRAERKKSVIDSSVPAASKPQVNALVARLPVLLPRAPRSLITPISGTLKV
ATLPLPTRVGGPQTAVPIINMILPPVPTLSGAGPGPGPGLGPRFGPGPGLGPGPGPGLGAGLGPGLGPGL
GAGPGPGLGAGLGAGLGLGPGRVPPRAPILPRGAENREVGISSDPRPHDKGIKRTAEVPLSEASGQDPPV
KEMKHETQDTTVSEAKRKRGRPRKKPGGSGERNATPEKSAAIVNSPRSPRLLWETWGSKRENNFIGRPEG
PGPGGEAERETVLVQGQQDGAVSKGERSLSSQEAKEAEDKIPPVTSKVSVIKGRIQKEALQLVKGEADAA
TQGNKGLKGRVLQSSLTPEHKDPKATPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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