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Report for CCDS46729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46729.1 Public Homo sapiens 22 TAFA5 24 110 108 CCDS HistoryNCBI Gene:25817Re-query CCDS DB by CCDS ID:46729.1Re-query CCDS DB by GeneID:25817See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46729.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358295.9 ENSP00000351043.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358295.9Link to Ensembl Protein Viewer:ENSP00000351043.5Re-query CCDS DB by Nucleotide ID:ENST00000358295Re-query CCDS DB by Protein ID:ENSP00000351043
Original member Current member NCBI NM_015381.7 NP_056196.2 Accepted alive Link to Nucleotide Sequence:NM_015381.7Link to Protein Sequence:NP_056196.2Re-query CCDS DB by Nucleotide ID:NM_015381Re-query CCDS DB by Protein ID:NP_056196Link to BLAST:NP_056196.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056196.2 125 Q7Z5A7-2 125 100% 0 0

Chromosomal Locations for CCDS 46729.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 48576481 48576571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 48646597 48646746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 48707717 48707844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 48749839 48749847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCAGCTCCTGAAGGCGCTCTGGGCACTGGCAGGGGCCGCGCTCTGCTGCTTCCTCGTCCTAGTGATCC
ACGCGCAGTTCCTCAAAGAAGGTCAGCTGGCCGCCGGCACCTGTGAGATTGTGACCTTGGACCGGGACAG
CAGCCAGCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCGTGTAGAAAGGGGCAGATCGCCGGC
ACCACGAGAGCCCGGCCCGCCTGTGTGGACGCAAGAATCATCAAGACCAAGCAGTGGTGTGACATGCTTC
CGTGTCTGGAGGGGGAAGGCTGCGACTTGTTAATCAACCGGTCAGGCTGGACGTGCACGCAGCCCGGCGG
GAGGATAAAGACCACCACGGTCTCCTGA

Translation (125 aa):
MQLLKALWALAGAALCCFLVLVIHAQFLKEGQLAAGTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAG
TTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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