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Report for CCDS41039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41039.1 Public Mus musculus X Gm5938 23 108 98 CCDS HistoryNCBI Gene:546335Re-query CCDS DB by CCDS ID:41039.1Re-query CCDS DB by GeneID:546335See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114030.2 ENSMUSP00000109664.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114030.2Link to Ensembl Protein Viewer:ENSMUSP00000109664.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114030Re-query CCDS DB by Protein ID:ENSMUSP00000109664
Original member Current member NCBI NM_001085534.2 NP_001079003.1 Accepted alive Link to Nucleotide Sequence:NM_001085534.2Link to Protein Sequence:NP_001079003.1Re-query CCDS DB by Nucleotide ID:NM_001085534Re-query CCDS DB by Protein ID:NP_001079003Link to BLAST:NP_001079003.1

Chromosomal Locations for CCDS 41039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78125519 78125569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78125996 78126135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78127041 78127114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78128443 78128553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78129225 78129323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78129560 78129576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGCAAAATTTCTGCTGCTTGCTTTGGCATTTGGACTGGCACATGCTGCGATGGAAGGACCTTGGAAAA
CTGTTGCTATTGCTGCTGATAGAGTAGACAAGATAGAGAGAGGTGGAAAACTGAGAATCTATTGTCGTAG
CCTTACCTGTGAAAAGGAATGCAAGGAAATGAAAGTCACATTTTATGTACTTGAAAATGGACAGTGCTCA
TTGACCACAATCACTGGGTATTTGCAAGAAGATGGCAAGACCTACAAAACTCAGTATCAAGGGGATAATC
ATTATGAACTTGTGAAGGAGACACCTGAGAACTTAGTATTTTATAGTGAGAATGTGGACAGAGCTGACCG
GAAAACAAAATTGATATTTGTTCTTGGCAATAAACCTTTAACTTCTGAGGAAAATGAAAGACTTGTGAAA
TATGCTGTGTCAAGCCACATTCCTCCTGAAAACATTAGACATGTCCTGGGTACAGATACCTGTCCTGAGT
AA

Translation (163 aa):
MAKFLLLALAFGLAHAAMEGPWKTVAIAADRVDKIERGGKLRIYCRSLTCEKECKEMKVTFYVLENGQCS
LTTITGYLQEDGKTYKTQYQGDNHYELVKETPENLVFYSENVDRADRKTKLIFVLGNKPLTSEENERLVK
YAVSSHIPPENIRHVLGTDTCPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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