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Report for CCDS29582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29582.1 Public Mus musculus 19 Cyb561a3 23 108 98 CCDS HistoryNCBI Gene:225912Re-query CCDS DB by CCDS ID:29582.1Re-query CCDS DB by GeneID:225912See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168445.1 ENSMUSP00000130680.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168445.1Link to Ensembl Protein Viewer:ENSMUSP00000130680.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168445Re-query CCDS DB by Protein ID:ENSMUSP00000130680
Original member Current member EBI ENSMUST00000235271.1 ENSMUSP00000157672.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235271.1Link to Ensembl Protein Viewer:ENSMUSP00000157672.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235271Re-query CCDS DB by Protein ID:ENSMUSP00000157672
Original member Current member EBI ENSMUST00000237581.1 ENSMUSP00000157884.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237581.1Link to Ensembl Protein Viewer:ENSMUSP00000157884.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237581Re-query CCDS DB by Protein ID:ENSMUSP00000157884
Original member Current member EBI ENSMUST00000237814.1 ENSMUSP00000158186.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237814.1Link to Ensembl Protein Viewer:ENSMUSP00000158186.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237814Re-query CCDS DB by Protein ID:ENSMUSP00000158186
Original member Current member NCBI NM_001282064.1 NP_001268993.1 Accepted alive Link to Nucleotide Sequence:NM_001282064.1Link to Protein Sequence:NP_001268993.1Re-query CCDS DB by Nucleotide ID:NM_001282064Re-query CCDS DB by Protein ID:NP_001268993Link to BLAST:NP_001268993.1
Original member Current member NCBI NM_001282067.2 NP_001268996.1 Accepted alive Link to Nucleotide Sequence:NM_001282067.2Link to Protein Sequence:NP_001268996.1Re-query CCDS DB by Nucleotide ID:NM_001282067Re-query CCDS DB by Protein ID:NP_001268996Link to BLAST:NP_001268996.1
Original member Current member NCBI NM_001362430.1 NP_001349359.1 Accepted alive Link to Nucleotide Sequence:NM_001362430.1Link to Protein Sequence:NP_001349359.1Re-query CCDS DB by Nucleotide ID:NM_001362430Re-query CCDS DB by Protein ID:NP_001349359Link to BLAST:NP_001349359.1
Original member Current member NCBI NM_001362431.1 NP_001349360.1 Accepted alive Link to Nucleotide Sequence:NM_001362431.1Link to Protein Sequence:NP_001349360.1Re-query CCDS DB by Nucleotide ID:NM_001362431Re-query CCDS DB by Protein ID:NP_001349360Link to BLAST:NP_001349360.1
Original member Current member NCBI NM_201351.2 NP_958739.1 Accepted alive Link to Nucleotide Sequence:NM_201351.2Link to Protein Sequence:NP_958739.1Re-query CCDS DB by Nucleotide ID:NM_201351Re-query CCDS DB by Protein ID:NP_958739Link to BLAST:NP_958739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268993.1 242 Q6P1H1-1 242 100% 0 0
NP_001268996.1 242 Q6P1H1-1 242 100% 0 0
NP_001349359.1 242 Q6P1H1-1 242 100% 0 0
NP_001349360.1 242 Q6P1H1-1 242 100% 0 0
NP_958739.1 242 Q6P1H1-1 242 100% 0 0

Chromosomal Locations for CCDS 29582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10582313 10582496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10585182 10585390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10586691 10586845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10587822 10587978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10588525 10588548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCTTCAGGATGGTTTTACCTGTCCTGCATGGTGCTGGGATCGCTGGGATCGATGTGCATCCTCTTCA
CTGCCTACTGGATGCAGTACTGGCGCGGTGGCTTTGCCTGGGATGGCACGGTGCTCATGTTTAACTGGCA
CCCAGTGCTCATGGTTGCCGGCATGGTGGTGCTCTATGGAGCTGCCTCACTGGTGTACCGCCTGCCTTCA
TCGTGGGTGGGGCCCAGGCTGCCCTGGAAAGTTCTCCATGCAGCACTGCACCTGCTGGCCTTCACCTGCA
CTGTGGTGGGGCTGATTGCCGTCTTTCGGTTTCACAACCACTCGAGAATCGCACACCTCTACTCCCTGCA
CAGCTGGCTGGGTATCACCACTGTAGTCCTCTTCGCCTGCCAGTGGTTCCTGGGCTTTGCTGTCTTCCTC
CTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCC
TTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTTGAAAAATGCCAC
CAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTT
GGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATA
GACAGCCCCTGTTGCATGACAGGGAATGA

Translation (242 aa):
MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYGAASLVYRLPS
SWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWLGITTVVLFACQWFLGFAVFL
LPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLFFVLKNATKPYSSLPGEAVFANSTGLLVVAF
GLLVLYVLLASSWKRPDPGALTDRQPLLHDRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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