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Report for CCDS70650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70650.1 Public Mus musculus 15 Pmm1 23 108 98 CCDS HistoryNCBI Gene:29858Re-query CCDS DB by CCDS ID:70650.1Re-query CCDS DB by GeneID:29858See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071462.6 ENSMUSP00000071405.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071462.6Link to Ensembl Protein Viewer:ENSMUSP00000071405.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071462Re-query CCDS DB by Protein ID:ENSMUSP00000071405
Original member Current member NCBI NM_001282040.1 NP_001268969.1 Accepted alive Link to Nucleotide Sequence:NM_001282040.1Link to Protein Sequence:NP_001268969.1Re-query CCDS DB by Nucleotide ID:NM_001282040Re-query CCDS DB by Protein ID:NP_001268969Link to BLAST:NP_001268969.1

Chromosomal Locations for CCDS 70650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81951490 81951612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81951924 81952039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81952725 81952800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81955649 81955748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81956169 81956260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81957896 81957910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81960715 81960801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCAGTCGCCGTCGAGGGCGCCCGCAGGAAAGAGCGCATCCTCTGCCTGTTTGACGTGGACGGGACCC
TCACGCCAGCTCGCCAGAAAATTGACCCTGAGACGATCCAGAACCACCTGGGGGAGGAGCTCCTGCAGGA
CTTGATCAACTTCTGCCTTAGCTACATGGCCCTGCTCAGACTGCCCAAGAAGCGTGGGACCTTCATTGAG
TTCCGGAATGGCATGCTGAACGTCTCGCCCATTGGCCGCAGCTGCACCCTGGAGGAGAGGATCGAGTTCT
CGGAACTGGACAAGAAGGAGAAGATCCGGGAGAAGTTTGTGGAAGCCTTGAAGACAGAGTTTGCTGGCAA
GGGGCTGCGGTTCTCCCGAGGAGGCATGATAAGCTTCGATGTCTTCCCCGAGGGCTGGGATAAGCGCTAC
TGCCTGGACAGCCTGGATGAAGACAGCTTTGACATCATCCACTTCTTTGGAAATGAGACCAGTCCTGGCG
GGAATGACTTTGAGATCTATGCGGACCCCCGGACTGTCGGCCATAGCGTGGTCTCCCCTCAGGACACTGT
ACAGCGATGCCGTGAGCTCTTCTTCCCAGAGACAGCCCACGAGGCGTGA

Translation (202 aa):
MAVAVEGARRKERILCLFDVDGTLTPARQKIDPETIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIE
FRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRY
CLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCRELFFPETAHEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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