NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50148.1 Public Mus musculus 17 Adgre4 23 108 98 CCDS HistoryNCBI Gene:52614Re-query CCDS DB by CCDS ID:50148.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025004.6 ENSMUSP00000025004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025004.6Link to Ensembl Protein Viewer:ENSMUSP00000025004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025004Re-query CCDS DB by Protein ID:ENSMUSP00000025004
Original member Current member NCBI NM_139138.3 NP_631877.2 Accepted alive Link to Nucleotide Sequence:NM_139138.3Link to Protein Sequence:NP_631877.2Re-query CCDS DB by Nucleotide ID:NM_139138Re-query CCDS DB by Protein ID:NP_631877Link to BLAST:NP_631877.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631877.2 689 Q91ZE5 689 100% 0 0

Chromosomal Locations for CCDS 50148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55760548 55760602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55777996 55778046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55778809 55778931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55784971 55785123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55791474 55791514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55791919 55792054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55794641 55794742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55797597 55797781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55799609 55799776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55802009 55802212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55814154 55814389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55817056 55817122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55818667 55818758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55820575 55820755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55843205 55843300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55852207 55852386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGTTGATGGGAGCAACTAGAGATATGGGAAGCAGGTGCCTTCTGCATGCCTCAGTTCCTGGAATGCTGC
TTATCTGGTCAATATTACAAATGATGAATATTTCAGCTTCCTGTCCCCAGTGCAATGAAAATGCCAGCTG
CTTCAACAGCACCCACTGTGTTTGTAAAGAAGGATTCTGGACGGGCTCTGAGAATAGAAGAATTATTGAG
CCCCATGAGAAATGTCAAGATATTAATGAGTGTCTACTGAAAGAATTGGTATGCAAGGATGTGTCGTACT
GCAGAAATAAAATTGGGACTTACATATGCAGCTGTGTAGTAAAATATCCTTTGTTCAACTGGGTAGCTGG
CATTATTAATATTGATCACCCTGATTGTTATGTGAACAAGAGCAAGAATACAGGATCAAAAACACATACT
TTGGGAGTACTGAGTGAATTTAAATCCAAAGAGGAGGTTGCAAAAGGAGCTACCAAGTTACTTCGCAAAG
TGGAACATCACATCTTGAATGAAAACTCAGATATACCAAAAAAGGATGAAAATCCTTTATTGGATATAGT
GTATGAAACTAAGAGGTGCAAGACGATGACTCTTCTAGAAGCTGGCAACAACACAATGAAGGTTGACTGC
ACTAGTGGTTTCAAAGAGCACAACAGTGGAGGTGAAACTGCAGTGGCTTTCATTGCATATAAGTCTCTTG
GGAATCTTCTAAATGGTTCCTTTTTTAGTAATGAAGAAGGGTTTCAGGAAGTGACACTGAACTCTCACAT
CGTTAGTGGAGCCATTCGCTCAGAGGTCAAACCTGTCCTCTCTGAACCTGTACTCCTGACTTTACAAAAT
ATTCAGCCCATTGACTCAAGAGCAGAACATCTCTGTGTCCATTGGGAAGGATCAGAGGAAGGGGGGAGCT
GGTCTACCAAAGGATGCTCTCACGTGTACACCAATAATTCCTACACCATTTGCAAGTGTTTCCACCTGTC
CAGCTTTGCTGTGCTCATGGCTCTACCCCATGAGGAGGATGGTGTGCTTTCTGCACTCTCTGTGATCACC
TATGTGGGACTGAGTCTTTCTCTCTTGTGCCTATTTCTGGCGGCCATCACTTTTCTCCTGTGCCGACCCA
TTCAGAATACCAGCACGACACTCCACCTGCAGCTCTCCATCTGCCTTTTCCTGGCTGACCTCCTCTTCCT
CACAGGCATCAACAGAACTAAGCCTAAGGTGCTGTGCTCCATCATAGCGGGGATGTTGCACTACCTCTAC
TTGGCTTCCTTCATGTGGATGTTTCTGGAAGGGCTACATCTTTTTCTCACTGTGAGCAATCTCAAAGTGG
CCAACTACAGCAACTCAGGCAGATTCAAGAAGAGGTTCATGTATCCTGTAGGATATGGGCTTCCTGCTTT
TATTGTTGCTGTATCTGCAATAGCTGGCCACAAGAATTATGGAACACACAACCACTGCTGGCTCAGCCTT
CATCGAGGATTCATCTGGAGCTTCTTGGGGCCAGCGGCAGCCATTATCTTGATAAACCTGGTGTTCTACT
TTCTAATAATATGGATTTTGAGAAGCAAACTTTCTTCTCTCAATAAAGAAGTTTCTACACTTCAAGACAC
AAAGGTTATGACATTTAAAGCCATTGTCCAGTTATTTGTGTTGGGATGTTCTTGGGGCATTGGCTTGTTT
ATTTTCATTGAAGTTGGGAAGACAGTGAGACTGATCGTTGCCTATCTGTTCACCATCATCAATGTCCTGC
AGGGTGTTTTGATATTTATGGTACATTGTCTGCTTAATCGCCAGGTGCGGATGGAATATAAGAAGTGGTT
TCATAGACTGCGGAAGGAAGTTGAAAGTGAAAGCACTGAAGTGTCTCATTCTACTACTCACACAAAAATG
GGTCTTTCTCTGAACCTGGAAAATTTCTGCCCAACAGGAAACCTCCATGATCCTTCTGACTCCATCCTTC
CAAGTACTGAAGTAGCAGGTGTATATCTAAGCACACCCAGGTCTCACATGGGTGCTGAGGATGTGAACTC
AGGTACTCACGCTTACTGGAGCAGAACTATTAGTGATTGA

Translation (689 aa):
MLMGATRDMGSRCLLHASVPGMLLIWSILQMMNISASCPQCNENASCFNSTHCVCKEGFWTGSENRRIIE
PHEKCQDINECLLKELVCKDVSYCRNKIGTYICSCVVKYPLFNWVAGIINIDHPDCYVNKSKNTGSKTHT
LGVLSEFKSKEEVAKGATKLLRKVEHHILNENSDIPKKDENPLLDIVYETKRCKTMTLLEAGNNTMKVDC
TSGFKEHNSGGETAVAFIAYKSLGNLLNGSFFSNEEGFQEVTLNSHIVSGAIRSEVKPVLSEPVLLTLQN
IQPIDSRAEHLCVHWEGSEEGGSWSTKGCSHVYTNNSYTICKCFHLSSFAVLMALPHEEDGVLSALSVIT
YVGLSLSLLCLFLAAITFLLCRPIQNTSTTLHLQLSICLFLADLLFLTGINRTKPKVLCSIIAGMLHYLY
LASFMWMFLEGLHLFLTVSNLKVANYSNSGRFKKRFMYPVGYGLPAFIVAVSAIAGHKNYGTHNHCWLSL
HRGFIWSFLGPAAAIILINLVFYFLIIWILRSKLSSLNKEVSTLQDTKVMTFKAIVQLFVLGCSWGIGLF
IFIEVGKTVRLIVAYLFTIINVLQGVLIFMVHCLLNRQVRMEYKKWFHRLRKEVESESTEVSHSTTHTKM
GLSLNLENFCPTGNLHDPSDSILPSTEVAGVYLSTPRSHMGAEDVNSGTHAYWSRTISD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH