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Report for CCDS25104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25104.1 Public Mus musculus 11 Slc46a1 23 108 98 CCDS HistoryNCBI Gene:52466Re-query CCDS DB by CCDS ID:25104.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001126.3 ENSMUSP00000001126.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001126.3Link to Ensembl Protein Viewer:ENSMUSP00000001126.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001126Re-query CCDS DB by Protein ID:ENSMUSP00000001126
Original member Current member NCBI NM_026740.2 NP_081016.2 Accepted alive Link to Nucleotide Sequence:NM_026740.2Link to Protein Sequence:NP_081016.2Re-query CCDS DB by Nucleotide ID:NM_026740Re-query CCDS DB by Protein ID:NP_081016Link to BLAST:NP_081016.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081016.2 459 Q6PEM8 459 100% 0 0

Chromosomal Locations for CCDS 25104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78465778 78466005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78466351 78467203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78468625 78468708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78470695 78470851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78471371 78471428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAGGGGCGCGTGAGCTCCGTGGGCTCGCCCCACAGTTTCCTCAACGCTCCCGTGCTTTTCCGCGGCC
CCGTGGAGCCCCTAGTCTTCCTGGCCAACTTTGCCCTGGTTCTGCAGGGACCGCTCACCACACAGTACCT
TTGGCACCGGTTCAGCACGGAGCTCGGCTACAATGGCACCCGCCACCGGGAGAACTGTGGGAACCAAAGC
GCGGATCCCCTCATGAAGGAAGTGGAGACCCTGACATCTCACTGGACCCTCTACATGAACGTGGGAGGCT
TCCTGGTGGGACTCTTCTGGTCCACCCTGCTGGGAGCCTGGAGTGACCGCGTGGGTCGCCGCCCATTGCT
GGTGCTGGCCTCTCTTGGTCTGCTGCTCCAGGCCGTGGTGTCCATCTTTGTGGTGCAGCTAGAACTGCAC
GTCGGGTTCTTCGTGCTTGGCCGAGCTCTTTGTGCCCTTCTGGGAGACTTCAACGGCCTCCTTGCTGCTA
GCTTTGCCTCTGTGGCAGATGTTAGCTCTAACCACAGTCGCACCTTCCGGATGGCTCTGCTGGAAGCATG
CATTGGTGTGGCCGGGACCCTGGCAAGCCTTCTCGGGGGTCACTGGCTCCGGGCCCAGGGTTATGCCAAC
CCCTTCTGGCTGGCTTTGGCCCTGCTGATTGTCATGGCTCTATACGCAGCATTTTGTTTTGGTGAGACGG
TGAAGGAGCCAAAGTCCACCAGGCTTTTCACGCTCCGCCATCATCGATCCATTGCCCGGCTATATGTGGT
TCCAGCCCCAGAAAAGTCCAGGATGCATCTAGCCCTGTACTCTTTGGCCATATTCGTGGTGGTTACTGTG
CATTTTGGGGCTCAAGATATCCTGACACTCTATGAGCTGAGCGCACCCCTCTGCTGGGACTCCAAGCTGA
TTGGCTATGGCTCAGCAGCCCAGCACCTACCCTACCTCACCAGCCTGCTGGGCCTAAGGCTTCTGCAATT
CTGCCTGGCTGACACCTGGGTGGCTGAGATTGGCCTGGCTTTCAACATCCTGGGAATGGTGGTCTTTGCG
TTTGCTACCATTACACCCCTCATGTTCACAGGGTACGGATTGCTCTTCCTGTCATTGGTCACGACGCCTG
TCATCCGGGCCAAGCTTTCCAAGCTGGTGAGCGAGTCGGAGCAGGGTGCTCTGTTCTCTGCTGTGGCCTG
TGTGAATAGCTTGGCCATGTTGATGGCCTCCGGCATCTTCAACTCCATCTACCCGGCCACTCTGAACTTC
ATGAAGGGCTTCCCCTTCCTCCTGGGAGCTGGCCTCCTCTTCATTCCAGCCATTCTGATTGGGGTACTGG
AAAAGGTTAATCCACACCCGGAGTTCCAGCAGTTTCCTCAGAGCCCCTGA

Translation (459 aa):
MEGRVSSVGSPHSFLNAPVLFRGPVEPLVFLANFALVLQGPLTTQYLWHRFSTELGYNGTRHRENCGNQS
ADPLMKEVETLTSHWTLYMNVGGFLVGLFWSTLLGAWSDRVGRRPLLVLASLGLLLQAVVSIFVVQLELH
VGFFVLGRALCALLGDFNGLLAASFASVADVSSNHSRTFRMALLEACIGVAGTLASLLGGHWLRAQGYAN
PFWLALALLIVMALYAAFCFGETVKEPKSTRLFTLRHHRSIARLYVVPAPEKSRMHLALYSLAIFVVVTV
HFGAQDILTLYELSAPLCWDSKLIGYGSAAQHLPYLTSLLGLRLLQFCLADTWVAEIGLAFNILGMVVFA
FATITPLMFTGYGLLFLSLVTTPVIRAKLSKLVSESEQGALFSAVACVNSLAMLMASGIFNSIYPATLNF
MKGFPFLLGAGLLFIPAILIGVLEKVNPHPEFQQFPQSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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