NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51807.1 Public Mus musculus 6 Reep1 23 108 98 CCDS HistoryNCBI Gene:52250Re-query CCDS DB by CCDS ID:51807.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121469.1 ENSMUSP00000112662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121469.1Link to Ensembl Protein Viewer:ENSMUSP00000112662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121469Re-query CCDS DB by Protein ID:ENSMUSP00000112662
Original member Current member NCBI NM_178608.4 NP_848723.1 Accepted alive Link to Nucleotide Sequence:NM_178608.4Link to Protein Sequence:NP_848723.1Re-query CCDS DB by Nucleotide ID:NM_178608Re-query CCDS DB by Protein ID:NP_848723Link to BLAST:NP_848723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848723.1 201 Q8BGH4 201 100% 0 0

Chromosomal Locations for CCDS 51807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71707970 71708001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71756364 71756436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71761365 71761441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71773188 71773308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71780722 71780835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71795147 71795324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71807791 71807801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGTGTCGTGGATCATCTCCAGGCTGGTGGTGCTTATATTTGGCACCCTTTATCCTGCATATTATTCAT
ACAAGGCTGTGAAGTCCAAGGACATTAAAGAATATGTCAAATGGATGATGTATTGGATTATATTTGCCCT
CTTCACCACGGCAGAGACGTTCACAGACATCTTCCTTTGCTGGTTTCCATTCTATTATGAACTAAAAATA
GCGTTTGTAGCCTGGCTGCTGTCTCCCTATACAAAAGGATCCAGCCTCCTGTACAGGAAGTTTGTTCATC
CCACATTGTCTTCAAAAGAAAAGGAAATCGATGACTGCCTGGTCCAAGCAAAAGATCGAAGCTATGACGC
CCTTGTGCACTTTGGGAAGCGGGGCTTGAATGTGGCAGCCACTGCAGCTGTGATGGCTGCCTCCAAGGGA
CAGGGTGCCTTGTCAGAGAGACTCCGGAGCTTCAGCATGCAGGACCTCACCACCATCAGGGGTGATGGTG
CTCCTGCTCCCTCGGGCCCTCCTCCACCAGGGACTGGGCGGTCCAGCGGCAAACACAGCCAGCCCAAGAT
GTCCAGGAGTGCTTCTGAGAGTGCCGGCAGCTCGGGCACCGCCTAG

Translation (201 aa):
MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKI
AFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKG
QGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGTGRSSGKHSQPKMSRSASESAGSSGTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH