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Report for CCDS36997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36997.1 Public Mus musculus 14 Pibf1 23 108 98 CCDS HistoryNCBI Gene:52023Re-query CCDS DB by CCDS ID:36997.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022650.8 ENSMUSP00000022650.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022650.8Link to Ensembl Protein Viewer:ENSMUSP00000022650.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022650Re-query CCDS DB by Protein ID:ENSMUSP00000022650
Original member NCBI NM_029320.3 NP_083596.2 Updated not alive Link to Nucleotide Sequence:NM_029320.3Link to Protein Sequence:NP_083596.2Re-query CCDS DB by Nucleotide ID:NM_029320Re-query CCDS DB by Protein ID:NP_083596
Current member NCBI NM_029320.4 NP_083596.2 Accepted alive Link to Nucleotide Sequence:NM_029320.4Link to Protein Sequence:NP_083596.2Re-query CCDS DB by Nucleotide ID:NM_029320Re-query CCDS DB by Protein ID:NP_083596Link to BLAST:NP_083596.2

Chromosomal Locations for CCDS 36997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99101050 99101301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99105169 99105269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99107299 99107497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99112970 99113089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99133236 99133369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99136453 99136561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99137042 99137223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99140537 99140662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99150643 99150741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99179315 99179480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99186481 99186631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99187718 99187808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99196349 99196451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99210940 99211070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99221559 99221643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99242839 99243009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99254161 99254211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGTCTCGCAAAATTGCCAAGGAACCAAAAAAAGTAAATATCTCTAGTTCTCTGGAGTCTGAAGATATTA
GTTTGGAAACAACCATTCATACAGATGATGTCTCATCATCAGAGGAGCGAGAAGGTAAAGTCAAAATCAC
CAGGCAGTTAATCGAAAGAAAAGAGATACTTCATAATATTCAGTTACTGAAAATCGAGCTATCCCAGAAA
AACATGATGATCGACAACTTGAAAATGGATTATCTTACAAAGATTGAGGAGCTAGAGGAAAAACTTAATG
ACGCCCTTCACCAGAAGCAGCTGCTAACTTTGCGATTAGACAATCAGTTGACTATTCAACAGAAAGATGC
CAAAAAATATCAAGAACTAATGAAACAAGAAATGGAAACCATTTTATTGCGACAGAAGCAACTGGAAGAA
ACAAACCATCAGCTGAGAGAAAAGGCTGGAGATGTTCGCCGAAATCTGCGAGACTTTGAGCTGACAGAAG
AGCAGTATGTGAAGCTAAAATCTTTTCCTGAAGATCAACTCTCTATTCCTGAATATGTATCTATTCGCTT
CTATGAGCTCGTGAACCCATTAAGAAAGGAAGTCTGTGAGCTACAGGTGAAGAAGAGTGAACTCTCTGAA
GAACTGAGTACAAGTAAAGGCCAACTGAAGCAGCTGACGGAGACATATGAAGAAGATCGAAGAAACAACG
CTGAACTTCTAATTCGATGTCAACGTTTGACCTTAGAATTAGCAGACACAAAACAGTTAGTTCAGCAAGG
TGATTACCGTCAAGAGAACTATGACAAAGTGAAGAGTGAACGCGATGCTCTGGAACAGGACGTACTCGAG
CTTAGAAGAAAACACGAAGTACTTGAAGCCTCTCACATAGCTCAAGCTAAGGAAAGGAATGAATTATCAA
AGGAGGTCAGCAGCCTGCAGCAGACAGTCACCCTGCTGCAGAAGGATAAAGACTACCTCAATCGCCAAAA
CATGGAACTCAGTGTACGCTGTGCCCATGAGGAGGATCGGCTGGAAAGGCTGCAAGTTCAACTGGAAGAC
ACCAAAAAGGCTAGAGAAGAGATGTATGAGAAATATGTCACGTCCAGAGACCATTATAAAACAGAATATG
AAAATAAACTACATGATGAACTGGAACAAATCAAATTGAAAACTAATCTAGAAATTGATCAGCTTCGAAG
TGCCTCTAGGGAAATGTATGAACGAGAAAACAGAAATCTCCGTGAAGCAAGGGATAATGCACTCGCTGAA
AAGAACCGAGCAGTGGCAGCGGAAAAGGACGCTCTGGGAAAGCATGAGCAGCTCCTAGACAGGTACAGAG
AACTCCAGCTCAGTACAGAGAGCAAGGTATCTGAGTTTCTCCATCAGAGCAAGTTGAAGTCCTTTGAAAG
TGAGCGTGTTCAACTCCTGCAAGAGGAAACTGCAAGAAATCTCACGCAGTGCCAGTTGGAGTGTGAAAAA
TATCAGAAGAAATTGGAGGTTTTAACTAAAGAATTTTATAGTCTCCAAACTTCTTCTGAAAAACGCATTA
CCGAACTCGAGGCACAGAACTCAGAGCATCAGGCAAGGTTAGACATTTACGAGAAGTTGGAAAAGGAGCT
TGATGAGATAATAATGCAAACAGCAGAAATTGAAAATGAAGATGAGGCTGAAAGAATTCTTTATTCCTAT
GGTTATGGTGCTAATGTTCCCACAACAGCTAAAAGACGACTAAAGCAAAGTGTCCACTTGGCAAGAAGAG
TTCTTCAGTTAGAAAAACAAAATTCATTAATTTTAAAAGATCTGGACCATCAAAAGAACCAAGTAAGACA
GCTTTCACAAGAGCTTGACAGAGCCAATTCACTGTTGAATCAGACTCAGCAGCCCTACAGATACCTCATA
GAGTCTGTGCGACAGAGAGATGCCAAGATTGACTCACTGATGAAGTCTACAGCTCAACTTGAGAAAGATG
TCAGCAACTTAAATAAAGAGAAGTCAGCCCTGCTGCAGACGAAGAACCAGATGGCACTGGATCTGGAGCA
GCTCCTCAGTCACCGCGAGGAATTTGCAGCTATGAAGCAGATCATCATTAATATGTGTAGTAAACATTCT
GAGAACAACTTATTTCTTACGAAAATGGAATCAAAAAGTGTGACAGAAAATCAAGCAAAGACTTTGAATA
TGCCAAGAGAACATGAAGAGAATATATTTATACCCAAGCCAACGCTCTTTACTAAAAAGGAAGCACAAGA
GTGGCCCAAGAGTCAGAAGATGAAGACCTAG

Translation (756 aa):
MSRKIAKEPKKVNISSSLESEDISLETTIHTDDVSSSEEREGKVKITRQLIERKEILHNIQLLKIELSQK
NMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMETILLRQKQLEE
TNHQLREKAGDVRRNLRDFELTEEQYVKLKSFPEDQLSIPEYVSIRFYELVNPLRKEVCELQVKKSELSE
ELSTSKGQLKQLTETYEEDRRNNAELLIRCQRLTLELADTKQLVQQGDYRQENYDKVKSERDALEQDVLE
LRRKHEVLEASHIAQAKERNELSKEVSSLQQTVTLLQKDKDYLNRQNMELSVRCAHEEDRLERLQVQLED
TKKAREEMYEKYVTSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAE
KNRAVAAEKDALGKHEQLLDRYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLTQCQLECEK
YQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSY
GYGANVPTTAKRRLKQSVHLARRVLQLEKQNSLILKDLDHQKNQVRQLSQELDRANSLLNQTQQPYRYLI
ESVRQRDAKIDSLMKSTAQLEKDVSNLNKEKSALLQTKNQMALDLEQLLSHREEFAAMKQIIINMCSKHS
ENNLFLTKMESKSVTENQAKTLNMPREHEENIFIPKPTLFTKKEAQEWPKSQKMKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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