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Report for CCDS76066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76066.1 Public Homo sapiens Y PCDH11Y 24 110 108 CCDS HistoryNCBI Gene:83259Re-query CCDS DB by CCDS ID:76066.1Re-query CCDS DB by GeneID:83259See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400457.3 ENSP00000383306.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400457.3Link to Ensembl Protein Viewer:ENSP00000383306.3Re-query CCDS DB by Nucleotide ID:ENST00000400457Re-query CCDS DB by Protein ID:ENSP00000383306
Original member Current member NCBI NM_032973.2 NP_116755.1 Accepted alive Link to Nucleotide Sequence:NM_032973.2Link to Protein Sequence:NP_116755.1Re-query CCDS DB by Nucleotide ID:NM_032973Re-query CCDS DB by Protein ID:NP_116755Link to BLAST:NP_116755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116755.1 1340 Q9BZA8-1 1340 100% 0 0

Chromosomal Locations for CCDS 76066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 5056824 5057459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5098215 5100707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5501057 5501255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5581775 5581798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 5737272 5737942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4023 nt):
ATGTTTAGGGTTGGCTTCTTAATAATTTCTTCTTCCTCTTCTCTCTCTCCTCTTCTTTTGGTCAGTGTTG
TGCGGGTTAATACAACAAACTGTCACAAGTGTTTGTTGTCCGGGACGTACATTTTCGCGGTCCTGCTAGT
ATGCGTGGTGTTCCACTCTGGCGCCCAGGAGAAAAACTACACCATCCGAGAAGAAATTCCAGAAAACGTC
CTGATAGGCAACTTGTTGAAAGACCTTAACTTGTCGCTGATTCCAAACAAGTCCTTGACAACTACTATGC
AGTTCAAGCTAGTGTACAAGACCGGAGATGTGCCACTGATTCGAATTGAAGAGGATACTGGTGAGATCTT
CACTACCGGCGCTCGCATTGATCGTGAGAAATTATGTGCTGGTATCCCAAGGGATGAGCATTGCTTTTAT
GAAGTGGAGGTTGCCATTTTGCCGGATGAAATATTTAGACTGGTTAAGATACGTTTTCTGATAGAAGATA
TAAATGATAATGCACCATTGTTCCCAGCAACAGTTATCAACATATCAATTCCAGAGAACTCGGCTATAAA
CTCTAAATATACTCTCCCAGCGGCTGTTGATCCTGACGTAGGCATAAACGGAGTTCAAAACTACGAACTA
ATTAAGAGTCAAAACATTTTTGGCCTCGATGTCATTGAAACACCAGAAGGAGACAAGATGCCACAACTGA
TTGTTCAAAAGGAGTTAGATAGGGAAGAGAAGGATACCTATGTGATGAAAGTAAAGGTTGAAGATGGTGG
CTTTCCTCAAAGATCCAGTACTGCTATTTTGCAAGTAAGTGTTACTGATACAAATGACAACCACCCAGTC
TTTAAGGAGACAGAGATTGAAGTCAGTATACCAGAAAATGCTCCTGTAGGCACTTCAGTGACACAGCTCC
ATGCCACAGATGCTGACATAGGTGAAAATGCCAAGATCCACTTCTCTTTCAGCAATCTAGTCTCCAACAT
TGCCAGGAGATTATTTCACCTCAATGCCACCACTGGACTTATCACAATCAAAGAACCACTGGATAGGGAA
GAAACACCAAACCACAAGTTACTGGTTTTGGCAAGTGATGGTGGATTGATGCCAGCAAGAGCAATGGTGC
TGGTAAATGTTACAGATGTCAATGATAATGTCCCATCCATTGACATAAGATACATCGTCAATCCTGTCAA
TGACACAGTTGTTCTTTCAGAAAATATTCCACTCAACACCAAAATTGCTCTCATAACTGTGACGGATAAG
GATGCGGACCATAATGGCAGGGTGACATGCTTCACAGATCATGAAATTCCTTTCAGATTAAGGCCAGTAT
TCAGTAATCAGTTCCTCCTGGAGAATGCAGCATATCTTGACTATGAGTCCACAAAAGAATATGCCATTAA
ATTACTGGCTGCAGATGCTGGCAAACCTCCTTTGAATCAGTCAGCAATGCTCTTCATCAAAGTGAAAGAT
GAAAATGACAATGCTCCAGTTTTCACCCAGTCTTTCGTAACTGTTTCTATTCCTGAGAATAACTCTCCTG
GCATCCAGTTGATGAAAGTAAGTGCAACGGATGCAGACAGTGGGCCTAATGCTGAGATCAATTACCTGCT
AGGCCCTGATGCTCCACCTGAATTCAGCCTGGATCGTCGTACAGGCATGCTGACTGTAGTGAAGAAACTA
GATAGAGAAAAAGAGGATAAATATTTATTCACAATTCTGGCAAAAGATAATGGGGTACCACCCTTAACCA
GCAATGTCACAGTCTTTGTAAGCATTATTGATCAGAATGACAATAGCCCAGTTTTCACTCACAATGAATA
CAAATTCTATGTCCCAGAAAACCTTCCAAGGCATGGTACAGTAGGACTAATCACTGTAACTGATCCTGAT
TATGGAGACAATTCTGCAGTTACGCTCTCCATTTTAGATGAGAATGATGACTTCACCATTGATTCACAAA
CTGGTGTCATCCGACCAAATATTTCATTTGATAGAGAAAAACAAGAATCTTACACTTTCTATGTAAAGGC
TGAGGATGGTGGTAGAGTATCACGTTCTTCAAGTGCCAAAGTAACCATAAATGTGGTTGATGTCAATGAC
AACAAACCAGTTTTCATTGTCCCTCCTTACAACTATTCTTATGAATTGGTTCTACCGTCCACTAATCCAG
GCACAGTGGTCTTTCAGGTAATTGCTGTTGACAATGACACTGGCATGAATGCAGAGGTTCGTTACAGCAT
TGTAGGAGGAAACACAAGAGATCTGTTTGCAATCGACCAAGAAACAGGCAACATAACATTGATGGAGAAA
TGTGATGTTACAGACCTTGGTTTACACAGAGTGTTGGTCAAAGCTAATGACTTAGGACAGCCTGATTCTC
TCTTCAGTGTTGTAATTGTCAATCTGTTCGTGAATGAGTCAGTGACCAATGCTACACTGATTAATGAACT
GGTGCGCAAAAGCATTGAAGCACCAGTGACCCCAAATACTGAGATAGCTGATGTATCCTCACCAACTAGT
GACTATGTCAAGATCCTGGTTGCAGCTGTTGCTGGCACCATAACTGTCGTTGTAGTTATTTTCATCACTG
CTGTAGTAAGATGTCGCCAGGCACCACACCTTAAGGCTGCTCAGAAAAACATGCAGAATTCTGAATGGGC
TACCCCAAACCCAGAAAACAGGCAGATGATAATGATGAAGAAAAAGAAAAAGAAGAAGAAGCATTCCCCT
AAGAACCTGCTGCTTAATGTTGTCACTATTGAAGAAACTAAGGCAGATGATGTTGACAGTGATGGAAACA
GAGTCACACTAGACCTTCCTATTGATCTAGAAGAGCAAACAATGGGAAAGTACAATTGGGTAACTACACC
TACTACTTTCAAGCCTGACAGCCCTGATTTGGCCCGACACTACAAATCTGCCTCTCCACAGCCTGCCTTC
CAAATTCAGCCTGAAACTCCCCTGAATTTGAAGCACCACATCATCCAAGAACTGCCTCTCGATAACACCT
TTGTGGCCTGTGACTCTATCTCCAATTGTTCCTCAAGCAGTTCAGATCCCTACAGCGTTTCTGACTGTGG
CTATCCAGTGACAACCTTCGAGGTACCTGTGTCCGTACACACCAGACCGTCCCAGCGGCGTGTCACATTT
CACCTGCCAGAAGGCTCTCAGGAAAGCAGCAGTGATGGTGGACTGGGAGACCATGATGCAGGCAGCCTTA
CCAGCACATCCCATGGCCTGCCCCTTGGCTATCCTCAGGAGGAGTACTTTGATCGTGCTACACCCAGCAA
TCGCACTGAAGGGGATGGCAACTCCGATCCTGAATCTACTTTCATACCTGGACTAAAGAAAGAAATAACT
GTTCAACCAACTGTGGAAGAGGCCTCTGACAACTGCACTCAAGAATGTCTCATCTATGGCCATTCTGATG
CCTGCTGGATGCCGGCATCTCTGGATCATTCCAGCTCTTCACAAGCACAGGCCTCTGCTCTATGCCACAG
CCCACCACTGTCACAGGCCTCTACTCAGCACCACAGCCCACCAGTGACACAGACCATTGTTCTCTGCCAC
AGCCCTCCAGTGACACAGACCATCGCATTGTGCCACAGCCCACCACCGATACAGGTGTCTGCTCTCCACC
ACAGTCCTCCTCTAGTGCAGGGTACTGCACTTCACCACAGCCCACCATCAGCACAGGCCTCAGCCCTCTG
CTACAGCCCTCCTTTAGCACAGGCTGCTGCAATCAGCCACAGCTCTTCTCTGCCACAGGTTATTGCCCTC
CATCGTAGTCAGGCCCAATCATCAGTCAGTTTGCAGCAAGGTTGGGTGCAAGGTGCTAATGGACTATGCT
CTGTTGATCAGGGAGTGCAAGGTAGTGCAACATCTCAGTTTTACACCATGTCTGAAAGACTTCATCCCAG
TGATGATTCAATTAAAGTCATTCCTTTGACAACCTTCGCTCCACGCCAACAGGCCAGACCGTCCAGAGGT
GATTCCCCCATTATGGAAACACATCCCTTGTAA

Translation (1340 aa):
MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIREEIPENV
LIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFY
EVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTLPAAVDPDVGINGVQNYEL
IKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPV
FKETEIEVSIPENAPVGTSVTQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDRE
ETPNHKLLVLASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKD
ENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKL
DREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPD
YGDNSAVTLSILDENDDFTIDSQTGVIRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVND
NKPVFIVPPYNYSYELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEK
CDVTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKKKKKHSP
KNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAF
QIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPSQRRVTF
HLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEIT
VQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCH
SPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFAPRQQARPSRG
DSPIMETHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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