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Report for CCDS1866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1866.1 Public Homo sapiens 2 PEX13 24 110 108 CCDS HistoryNCBI Gene:5194Re-query CCDS DB by CCDS ID:1866.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295030.6 ENSP00000295030.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295030.6Link to Ensembl Protein Viewer:ENSP00000295030.4Re-query CCDS DB by Nucleotide ID:ENST00000295030Re-query CCDS DB by Protein ID:ENSP00000295030
Original member Current member NCBI NM_002618.4 NP_002609.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002618.4Link to Protein Sequence:NP_002609.1Re-query CCDS DB by Nucleotide ID:NM_002618Re-query CCDS DB by Protein ID:NP_002609Link to BLAST:NP_002609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002609.1 403 Q92968 403 100% 0 0

Chromosomal Locations for CCDS 1866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61017760 61017851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61031419 61032113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61045726 61045851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61048472 61048770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCGTCCCAGCCGCCACCTCCCCCCAAACCCTGGGAGACCCGCCGAATTCCGGGAGCCGGACCGGGAC
CAGGACCGGGCCCCACTTTCCAATCTGCTGATTTGGGTCCTACTTTAATGACAAGACCTGGACAACCAGC
ACTTACCAGAGTGCCCCCACCTATTCTTCCAAGGCCATCACAGCAGACAGGAAGTAGCAGTGTGAACACT
TTTAGACCTGCTTACAGTTCATTTTCTTCTGGATATGGTGCCTATGGAAATTCATTTTATGGAGGCTATA
GTCCTTATAGTTATGGATATAATGGGCTGGGCTACAACCGCCTCCGTGTAGATGATCTTCCACCCAGTAG
ATTTGTTCAGCAAGCTGAAGAAAGCAGCAGGGGTGCATTTCAGTCCATTGAAAGTATTGTGCATGCATTT
GCCTCTGTCAGTATGATGATGGATGCTACCTTTTCAGCTGTCTATAACAGTTTCAGGGCTGTATTGGATG
TAGCAAATCACTTTTCCCGATTGAAAATACACTTTACAAAAGTGTTTTCAGCTTTTGCATTGGTTAGGAC
TATACGGTATCTTTACAGACGGCTACAGCGGATGTTAGGTTTAAGAAGAGGCTCTGAGAATGAAGACCTC
TGGGCAGAGAGTGAAGGAACTGTGGCATGCCTTGGTGCTGAGGACCGAGCAGCTACCTCAGCAAAATCTT
GGCCAATATTCTTGTTCTTTGCTGTTATCCTTGGTGGTCCTTACCTCATTTGGAAACTATTGTCTACTCA
CAGTGATGAAGTAACAGACAGCATCAACTGGGCAAGTGGTGAGGATGACCATGTAGTTGCCAGAGCAGAA
TATGATTTTGCTGCCGTATCTGAAGAAGAAATTTCTTTCCGGGCTGGTGATATGCTGAACTTAGCTCTCA
AAGAACAACAACCCAAAGTGCGTGGTTGGCTTCTGGCTAGCCTTGATGGCCAAACAACAGGACTTATACC
TGCGAATTATGTCAAAATTCTTGGCAAAAGAAAAGGTAGGAAAACGGTGGAATCAAGTAAAGTTTCCAAG
CAGCAACAATCTTTTACCAACCCAACACTAACTAAAGGAGCCACGGTTGCTGATTCTTTGGATGAACAGG
AAGCTGCCTTTGAATCTGTTTTTGTTGAAACTAATAAGGTTCCAGTTGCACCTGATTCCATTGGGAAAGA
TGGAGAAAAGCAAGATCTTTGA

Translation (403 aa):
MASQPPPPPKPWETRRIPGAGPGPGPGPTFQSADLGPTLMTRPGQPALTRVPPPILPRPSQQTGSSSVNT
FRPAYSSFSSGYGAYGNSFYGGYSPYSYGYNGLGYNRLRVDDLPPSRFVQQAEESSRGAFQSIESIVHAF
ASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRMLGLRRGSENEDL
WAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAE
YDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKVSK
QQQSFTNPTLTKGATVADSLDEQEAAFESVFVETNKVPVAPDSIGKDGEKQDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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