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Report for CCDS36128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36128.1 Public Mus musculus 11 Fbll1 23 108 98 CCDS HistoryNCBI Gene:237730Re-query CCDS DB by CCDS ID:36128.1Re-query CCDS DB by GeneID:237730See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 36128.1
This locus represents a retrotransposed intronless copy of the fibrillarin locus on chromosome 7. Although this locus could be interpreted to be a fibrillarin pseudogene, there is specific transcript support for this location and the CDS is intact compared to that of fibrillarin. Assuming that the transcript is translated, and due to lack of experimental evidence to say otherwise, the protein is represented in this CCDS.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160726.3 ENSMUSP00000128889.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160726.3Link to Ensembl Protein Viewer:ENSMUSP00000128889.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160726Re-query CCDS DB by Protein ID:ENSMUSP00000128889
Original member Current member NCBI NM_001004147.3 NP_001004147.1 Accepted alive Link to Nucleotide Sequence:NM_001004147.3Link to Protein Sequence:NP_001004147.1Re-query CCDS DB by Nucleotide ID:NM_001004147Re-query CCDS DB by Protein ID:NP_001004147Link to BLAST:NP_001004147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004147.1 314 Q80WS3 314 100% 0 0

Chromosomal Locations for CCDS 36128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 35797490 35798434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAAACCCGCGGGCGGCCGCGGCGGCTGGGGCTGGGGTGGCGGCAAGGGAGGCAGCAAGGGAGGTGACA
CGGGCTCAGGGACCAAAGGCGGCTTCGGGGCACGCACACGCGGCTCCAGCGGCGGCGGCCGGGGCCGGGG
ACGAGGCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGCGACAGGCAGCGACGCGGCGGTCCAGGCAAGAAC
AAGAACCGCCGCAAGAAGGGCATCACGGTGTCGGTGGAGCCGCATCGGCACGAGGGCGTGTTCATCTACC
GCGGCGCGGAGGATGCTCTGGTCACACTGAACATGGTGCCTGGAGTCTCGGTGTACGGCGAGAAGCGCGT
CACCGTGATGGAGAACGGGGAGAAACAGGAGTACCGCACGTGGAATCCCTTCCGCTCCAAATTGGCAGCG
GCCATCCTGGGCGGCGTGGACCAGATCCACATCAAGCCCAAGTCCAAAGTGTTGTACCTGGGCGCCGCCT
CCGGAACCACTGTCTCACACGTCTCCGACATCATCGGCCCCGACGGCCTGGTCTATGCGGTTGAATTCTC
CCATCGCGCCGGCCGCGATCTGGTCAACGTGGCCAAGAAGCGCACCAACATCATCCCGGTGCTGGAAGAT
GCCCGGCACCCGCTCAAGTATCGCATGCTCATTGGCATGGTGGACGTGATCTTCGCCGATGTGGCCCAGC
CAGATCAGTCGCGCATCGTGGCGCTTAACGCCCACACCTTTCTGCGCAACGGAGGCCACTTTCTCATTTC
CATCAAGGCCAACTGCATCGACTCCACAGCGTCTGCCGAGGCCGTGTTTGCTTCTGAGGTGAGGAAGCTG
CAACAGGAGAACTTGAAGCCACAGGAGCAGCTGACTCTGGAGCCCTACGAAAGGGACCACGCCGTCGTCG
TCGGGGTCTATCGGCCCCCACCCAAGAGCAAGTAG

Translation (314 aa):
MKPAGGRGGWGWGGGKGGSKGGDTGSGTKGGFGARTRGSSGGGRGRGRGGGGGGGGGGGDRQRRGGPGKN
KNRRKKGITVSVEPHRHEGVFIYRGAEDALVTLNMVPGVSVYGEKRVTVMENGEKQEYRTWNPFRSKLAA
AILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRDLVNVAKKRTNIIPVLED
ARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGHFLISIKANCIDSTASAEAVFASEVRKL
QQENLKPQEQLTLEPYERDHAVVVGVYRPPPKSK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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