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Report for CCDS26116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26116.1 Public Mus musculus 12 Cpsf2 23 108 98 CCDS HistoryNCBI Gene:51786Re-query CCDS DB by CCDS ID:26116.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047357.9 ENSMUSP00000047797.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047357.9Link to Ensembl Protein Viewer:ENSMUSP00000047797.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047357Re-query CCDS DB by Protein ID:ENSMUSP00000047797
Original member Current member NCBI NM_016856.3 NP_058552.1 Accepted alive Link to Nucleotide Sequence:NM_016856.3Link to Protein Sequence:NP_058552.1Re-query CCDS DB by Nucleotide ID:NM_016856Re-query CCDS DB by Protein ID:NP_058552Link to BLAST:NP_058552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058552.1 782 O35218 782 100% 0 0

Chromosomal Locations for CCDS 26116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 101981947 101982095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101983176 101983335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101983420 101983525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101985221 101985350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101987258 101987373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101988633 101988820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101989789 101990079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101996819 101996919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101997255 101997455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101998537 101998689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101999373 101999598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102000677 102000976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102002628 102002762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102003129 102003221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGACATCTATCATCAAGTTAACCACCCTCTCTGGGGTTCAAGAAGAGTCCGCTCTTTGCTATCTTCTCC
AGGTTGATGAGTTTAGGTTTTTGTTGGACTGTGGCTGGGATGAACACTTCTCTGTGGACATTATTGATTC
CCTGAGGAAGCATGTTCACCAGATCGATGCAGTGCTCCTGTCTCATCCTGATCCACTCCACCTCGGTGCC
CTCCCATTCGCCGTGGGGAAGCTGGGTCTAAACTGTGCCATCTATGCAACAATTCCTGTGTATAAAATGG
GCCAGATGTTCATGTACGACCTCTATCAGTCTCGACACAATACAGAAGATTTTACCCTCTTTACATTGGA
TGATGTGGATGCAGCCTTTGACAAAATACAGCAGCTGAAGTTCTCTCAGATTGTGAACCTGAAAGGCAAA
GGACATGGTTTGTCTATCACACCCCTGCCAGCTGGTCATATGATAGGAGGGACAATATGGAAAATAGTCA
AAGATGGAGAAGAAGAAATTGTGTATGCCGTGGACTTCAACCACAAGAGGGAGATCCACTTAAATGGATG
TTCCCTGGAAATGCTAAGCAGACCCTCTCTACTTATCACAGACTCATTTAATGCTACTTACGTGCAGCCT
AGAAGGAAGCAGAGAGATGAGCAGCTCCTGACAAACGTCCTGGAAACGCTTCGGGGCGACGGGAACGTGC
TGATAGCTGTGGACACAGCAGGCAGAGTTCTGGAGCTTGCTCAACTCCTGGATCAGATTTGGAGAACTAA
AGATGCCGGGTTGGGCGTTTACTCGCTGGCTCTCCTGAACAACGTCAGTTACAACGTGGTGGAGTTTTCT
AAGTCGCAGGTAGAATGGATGAGTGATAAATTGATGAGATGTTTTGAAGACAAAAGAAATAACCCATTTC
AGTTTCGCCATCTCTCTCTGTGCCACGGTCTTTCTGACTTGGCTCGAGTTCCAAGCCCCAAAGTTGTACT
TGCCAGCCAGCCTGACCTGGAGTGTGGATTCTCAAGGGACCTCTTTATTCAGTGGTGTCAGGACCCTAAA
AACTCAATCATTCTAACTTATAGGACAACTCCGGGGACTTTAGCACGTTTCTTAATCGATAATCCTACTG
AGAAAGTTACAGAAATCGAGCTGAGGAAACGTGTGAAGCTTGAAGGGAAAGAACTTGAGGAATATGTGGA
AAAAGAAAAACTCAAGAAAGAAGCTGCTAAGAAACTGGAGCAGTCGAAAGAGGCAGACATCGACTCCAGT
GACGAGAGTGACGTGGAGGAAGACGTGGACCAGCCATCGGCTCACAAGACAAAGCACGACCTGATGATGA
AGGGGGAAGGCAGCCGCAAAGGGAGCTTCTTCAAACAGGCCAAGAAGTCCTACCCCATGTTTCCTGCCCC
AGAGGAAAGAATTAAATGGGACGAGTATGGCGAGATCATCAAACCAGAAGATTTCTTAGTGCCAGAACTT
CAGGCTACTGAAGAAGAAAAAAGCAAATTAGAATCTGGCTTGACAAATGGAGAGGAACCCATGGACCAGG
ACCTGTCTGATGTTCCCACCAAGTGTGTTTCTGCAACAGAGTCTATTGAGATAAAAGCCAGAGTTACTTA
CATAGACTATGAAGGACGCTCCGATGGAGACTCCATTAAAAAGATCATCAATCAGATGAAGCCACGGCAG
CTCATCATTGTCCACGGCCCACCAGAGGCCAGCCAGGATCTGGCCGAGTGCTGCCGTGCGTTTGGTGGGA
AAGATATTAAAGTGTACATGCCAAAGCTGCACGAGACCGTCGATGCCACCAGTGAAACGCATATCTACCA
GGTAAGATTAAAAGACTCACTTGTCAGCTCCCTTCAGTTCTGTAAAGCTAAAGATGCCGAGTTAGCTTGG
ATAGATGGCGTCTTAGACATGAGAGTTTCCAAAGTGGACACGGGAGTTATTTTAGAAGAAGGAGAGCTCA
AGGACGATGGAGAAGACTCTGAAATGCAAGTGGATGCTCCATCCGATTCTAGTGCCATGGCCCAGCAGAA
GGCCATGAAGAGTCTGTTTGGAGAGGACGAGAAAGAGTTGGGTGAGGAGACTGAGATCATCCCCACGCTG
GAGCCTTTGCCACCTCACGAGGTTCCTGGACATCAGTCAGTTTTTATGAATGAACCAAGACTGTCTGACT
TCAAGCAAGTTCTTTTGCGGGAGGGGATTCAAGCGGAATTTGTAGGGGGCGTACTTGTCTGCAACAATCA
AGTAGCAGTTCGCAGAACAGAAACTGGACGCATCGGATTAGAAGGCTGCCTTTGTCAAGACTTTTATAGG
ATACGAGACCTTTTATATGAACAGTATGCCATTGTGTAA

Translation (782 aa):
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLLSHPDPLHLGA
LPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGK
GHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQP
RRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFS
KSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPK
NSIILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPEL
QATEEEKSKLESGLTNGEEPMDQDLSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQ
LIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAW
IDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELGEETEIIPTL
EPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYR
IRDLLYEQYAIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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