NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1515.1 Public Homo sapiens 1 KCTD3 24 110 108 CCDS HistoryNCBI Gene:51133Re-query CCDS DB by CCDS ID:1515.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259154.9 ENSP00000259154.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259154.9Link to Ensembl Protein Viewer:ENSP00000259154.2Re-query CCDS DB by Nucleotide ID:ENST00000259154Re-query CCDS DB by Protein ID:ENSP00000259154
Original member Current member NCBI NM_016121.5 NP_057205.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016121.5Link to Protein Sequence:NP_057205.2Re-query CCDS DB by Nucleotide ID:NM_016121Re-query CCDS DB by Protein ID:NP_057205Link to BLAST:NP_057205.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057205.2 815 Q9Y597-1 815 100% 0 0

Chromosomal Locations for CCDS 1515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 215567686 215567768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215573786 215573839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215574073 215574118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215575901 215575974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215577670 215577728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215578001 215578081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215579000 215579137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215579909 215579999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215586495 215586685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215595356 215595471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215601867 215601954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215602085 215602201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215604132 215604302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215608017 215608172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215611825 215611921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215618886 215619070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215619153 215619291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 215620057 215620618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGGCGGGAGGGCACTGCGGCAGCTTCCCCGCGGCGGCGGCCGGCAGCGGCGAGATCGTCCAACTGAACG
TAGGGGGGACCAGATTTAGTACCTCAAGACAAACTCTTATGTGGATTCCAGATTCTTTTTTTTCCAGTTT
GCTGAGTGGGAGAATTTCAACACTTCGAGATGAAACTGGTGCTATATTTATTGATAGAGATCCAGCAGCA
TTTGCACCCATTTTAAATTTTCTTCGGACAAAAGAACTAGACTTAAGGGGAGTGAGTATTAATGTTCTCA
GGCATGAAGCAGAATTTTACGGGATCACTCCATTAGTAAGAAGGCTTCTCTTATGTGAAGAATTGGAGCG
TTCCTCTTGTGGCAGTGTCCTTTTTCATGGTTACTTGCCCCCACCAGGTATTCCTAGTCGTAAAATAAAC
AACACAGTCAGATCTGCTGATTCTAGGAATGGTCTAAATTCTACAGAAGGTGAAGCCCGGGGAAATGGTA
CACAGCCTGTTCTCTCTGGAACGGGAGAAGAAACTGTTAGGCTAGGATTTCCTGTGGATCCACGAAAGGT
GCTAATAGTAGCTGGCCATCACAACTGGATTGTAGCTGCATATGCCCATTTTGCTGTGTGTTACAGAATC
AAAGAATCTTCAGGATGGCAGCAAGTGTTTACGAGCCCATATTTGGATTGGACTATCGAACGAGTAGCTT
TAAATGCAAAGGTGGTTGGAGGGCCACATGGAGACAAAGACAAAATGGTTGCTGTTGCCTCAGAGAGTAG
CATCATCTTGTGGAGTGTTCAGGATGGGGGAAGTGGAAGTGAAATTGGAGTGTTCAGCCTGGGTGTTCCT
GTAGATGCTCTCTTCTTTATTGGTAACCAGTTGGTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGA
ATGCTGTCACTCAGCACTGGCAGGTTCAAGATGTTGTTCCTATAACTAGTTATGACACTGCTGGATCATT
CCTTCTGCTTGGATGTAACAATGGATCAATATATTACATAGATATGCAGAAGTTCCCCTTGCGAATGAAA
GATAATGATCTTCTTGTAACTGAACTGTATCATGATCCTTCAAATGATGCTATTACTGCTCTGAGTGTTT
ACCTCACACCCAAAACAAGTGTCAGTGGTAACTGGATCGAGATCGCCTATGGTACGAGCTCTGGAGCAGT
ACGAGTGATTGTACAACACCCAGAGACAGTTGGGTCAGGTCCTCAGCTTTTTCAGACTTTCACAGTTCAC
CGAAGTCCCGTAACAAAAATCATGCTATCAGAGAAGCATCTTGTATCAGTCTGTGCAGATAATAATCATG
TCCGGACGTGGACAGTAACACGATTCAGAGGAATGATCTCTACTCAGCCAGGTTCTACTCCTTTAGCGTC
ATTCAAGATACTATCCCTGGAGGAGACAGAAAGTCATGGTAGCTATTCCTCTGGAAATGACATAGGACCT
TTTGGAGAGCGAGACGATCAACAGGTGTTTATCCAGAAAGTTGTTCCCATCACCAACAAACTATTTGTAA
GACTCTCATCGACTGGAAAAAGAATATGTGAGATCCAGGCTGTTGACTGTACTACAATATCCTCATTTAC
AGTGAGGGAATGTGAGGGATCCAGTAGGATGGGCTCAAGACCAAGGCGCTACTTGTTCACAGGCCATACA
AATGGCAGTATTCAAATGTGGGATCTGACCACTGCTATGGATATGGTTAACAAAAGTGAAGATAAGGATG
TAGGTGGTCCAACCGAAGAAGAGCTACTCAAATTACTCGATCAATGTGATTTGAGCACATCTCGCTGTGC
TACTCCTAACATCAGTCCAGCAACTTCCGTAGTTCAGCATAGCCACTTACGAGAATCAAATTCTAGCCTT
CAGCTTCAGCACCATGATACCACCCATGAAGCAGCTACTTACGGTTCCATGAGGCCTTACAGAGAAAGTC
CTTTATTAGCAAGGGCAAGAAGGACTGAGAGCTTTCACAGTTATAGGGACTTCCAGACTATTAATTTGAA
CAGAAATGTAGAAAGAGCTGTCCCTGAAAATGGTAACTTGGGTCCAATACAAGCTGAAGTGAAAGGGGCA
ACAGGGGAATGTAATATATCTGAGAGAAAGTCTCCTGGAGTAGAAATAAAAAGTTTGAGAGAATTGGATA
GTGGATTGGAAGTGCATAAAATAGCTGAAGGTTTTTCAGAATCCAAGAAAAGGTCATCAGAAGATGAAAA
TGAAAATAAAATAGAGTTTAGGAAGAAAGGAGGATTTGAAGGGGGAGGATTCCTTGGAAGAAAGAAAGTT
CCCTATCTGGCGTCATCACCAAGTACTTCCGATGGAGGAACTGACTCACCTGGTACTGCGTCCCCATCTC
CTACAAAGACTACTCCATCTCCTCGGCATAAAAAAAGTGATTCTTCAGGTCAGGAGTACAGCTTGTGA

Translation (815 aa):
MAGGHCGSFPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETGAIFIDRDPAA
FAPILNFLRTKELDLRGVSINVLRHEAEFYGITPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKIN
NTVRSADSRNGLNSTEGEARGNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRI
KESSGWQQVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFSLGVP
VDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRMK
DNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTVH
RSPVTKIMLSEKHLVSVCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGP
FGERDDQQVFIQKVVPITNKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHT
NGSIQMWDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSHLRESNSSL
QLQHHDTTHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTINLNRNVERAVPENGNLGPIQAEVKGA
TGECNISERKSPGVEIKSLRELDSGLEVHKIAEGFSESKKRSSEDENENKIEFRKKGGFEGGGFLGRKKV
PYLASSPSTSDGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH