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Report for CCDS1520.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1520.2 Public Homo sapiens 1 RRP15 24 110 108 CCDS HistoryNCBI Gene:51018Re-query CCDS DB by CCDS ID:1520.2See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1520.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366932.4 ENSP00000355899.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366932.4Link to Ensembl Protein Viewer:ENSP00000355899.3Re-query CCDS DB by Nucleotide ID:ENST00000366932Re-query CCDS DB by Protein ID:ENSP00000355899
Original member Current member NCBI NM_016052.4 NP_057136.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016052.4Link to Protein Sequence:NP_057136.2Re-query CCDS DB by Nucleotide ID:NM_016052Re-query CCDS DB by Protein ID:NP_057136Link to BLAST:NP_057136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057136.2 282 Q9Y3B9 282 100% 0 0

Chromosomal Locations for CCDS 1520.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 218285317 218285455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 218302294 218302559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 218305028 218305125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 218307431 218307632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 218330948 218331091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCAGCCGCCGCTCCGGACTCACGTGTGAGTGAGGAAGAAAACCTGAAAAAGACCCCAAAGAAGAAGA
TGAAAATGGTAACTGGAGCCGTAGCGTCGGTGCTGGAAGACGAGGCCACAGACACTTCTGATAGTGAAGG
AAGCTGTGGATCGGAAAAGGACCACTTTTATTCTGATGATGACGCAATAGAAGCTGACAGTGAGGGTGAT
GCTGAGCCCTGTGACAAAGAAAATGAAAATGATGGAGAATCAAGTGTTGGGACTAATATGGGCTGGGCAG
ATGCTATGGCTAAAGTCCTCAACAAGAAAACTCCTGAAAGTAAACCTACTATTCTGGTCAAAAATAAGAA
GCTGGAAAAGGAAAAAGAAAAGTTAAAGCAAGAAAGACTAGAGAAAATAAAACAGCGTGATAAGAGGCTG
GAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTCCAAGACAAAGAGACAGAGAGAAATCTTCAGA
GAATTGCAACAAGGGGTGTGGTGCAATTATTTAATGCTGTTCAGAAACATCAAAAGAATGTTGATGAAAA
GGTTAAGGAAGCTGGAAGTTCTATGAGAAAGCGTGCTAAGTTGATATCAACTGTTTCCAAGAAAGATTTC
ATCAGTGTTTTGAGAGGGATGGATGGAAGTACAAATGAGACTGCTTCAAGCAGGAAGAAACCAAAAGCCA
AACAGACTGAAGTGAAATCAGAAGAAGGCCCAGGTTGGACGATCCTACGTGATGATTTCATGATGGGAGC
ATCTATGAAAGACTGGGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAATCTGCAAGTGACTCT
GATACATAA

Translation (282 aa):
MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGD
AEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRL
EWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDF
ISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDS
DT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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