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Report for CCDS20045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20045.1 Public Mus musculus 6 Try5 23 108 98 CCDS HistoryNCBI Gene:103964Re-query CCDS DB by CCDS ID:20045.1Re-query CCDS DB by GeneID:103964See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064324.11 ENSMUSP00000064498.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064324.11Link to Ensembl Protein Viewer:ENSMUSP00000064498.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064324Re-query CCDS DB by Protein ID:ENSMUSP00000064498
Original member Current member NCBI NM_001003405.4 NP_001003405.1 Accepted alive Link to Nucleotide Sequence:NM_001003405.4Link to Protein Sequence:NP_001003405.1Re-query CCDS DB by Nucleotide ID:NM_001003405Re-query CCDS DB by Protein ID:NP_001003405Link to BLAST:NP_001003405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003405.1 246 Q9QUK9 246 100% 0 0

Chromosomal Locations for CCDS 20045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41311277 41311426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41311693 41311829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41312187 41312440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41313349 41313508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41314656 41314695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGAATTCACTCCTGTTCCTGGCCCTTGTGGGAGCTGCTGTTGCTTTCCCTGTGGATGATGATGACAAGA
TCGTTGGAGGATACACCTGCCGAGAGAATTCTATCCCCTACCAGGTGTCTCTGAACTCTGGCTACCACTT
CTGTGGAGGTTCCCTCATCAATGACCAGTGGGTGGTGTCTGCAGCTCATTGCTACAAAACCCGCATCCAA
GTGAGACTGGGAGAGCACAACATCAATGTCCTCGAGGGCAATGAGCAGTTTGTCAATTCTGCCAAGATCA
TCAAGCATCCCAACTTCAATAGCAGGACCCTGAACAACGACATCATGCTGATCAAACTGGCTTCCCCTGT
GACCCTCAATGCCAGAGTGGCCACTGTGGCTCTGCCCAGCTCCTGTGCACCTGCAGGCACTCAGTGTCTC
ATCTCTGGCTGGGGCAACACCTTGAGCTTTGGTGTGAACAACCCAGACCTGCTTCAATGCCTGGATGCCC
CATTGCTACCTCAGGCTGACTGTGAGGCCTCTTATCCTGGAAAGATCACCAATAACATGATCTGTGTTGG
CTTCCTGGAGGGAGGCAAAGATTCCTGCCAGGGTGACTCTGGTGGTCCTGTGGTTTGCAATGGACAGCTC
CAGGGCATTGTCTCCTGGGGCTATGGCTGTGCCCTGAAGGACAACCCTGGTGTGTACACCAAGGTCTGCA
ACTATGTGGACTGGATTCAGGACACCATTGCCGCAAACTAA

Translation (246 aa):
MNSLLFLALVGAAVAFPVDDDDKIVGGYTCRENSIPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKTRIQ
VRLGEHNINVLEGNEQFVNSAKIIKHPNFNSRTLNNDIMLIKLASPVTLNARVATVALPSSCAPAGTQCL
ISGWGNTLSFGVNNPDLLQCLDAPLLPQADCEASYPGKITNNMICVGFLEGGKDSCQGDSGGPVVCNGQL
QGIVSWGYGCALKDNPGVYTKVCNYVDWIQDTIAAN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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