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Report for CCDS11078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11078.1 Public Homo sapiens 17 MED31 24 110 108 CCDS HistoryNCBI Gene:51003Re-query CCDS DB by CCDS ID:11078.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225728.8 ENSP00000225728.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225728.8Link to Ensembl Protein Viewer:ENSP00000225728.3Re-query CCDS DB by Nucleotide ID:ENST00000225728Re-query CCDS DB by Protein ID:ENSP00000225728
Original member Current member NCBI NM_016060.3 NP_057144.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016060.3Link to Protein Sequence:NP_057144.1Re-query CCDS DB by Nucleotide ID:NM_016060Re-query CCDS DB by Protein ID:NP_057144Link to BLAST:NP_057144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057144.1 131 Q9Y3C7 131 100% 0 0

Chromosomal Locations for CCDS 11078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6644467 6644659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6649982 6650078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6650356 6650433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6651501 6651528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGCCGCTGCTGTCGCTATGGAGACAGATGATGCTGGAAATCGACTTCGGTTTCAGTTGGAGTTGGAAT
TTGTGCAATGTTTAGCCAACCCAAATTACCTTAATTTTCTTGCCCAAAGAGGTTACTTCAAAGACAAAGC
TTTTGTTAATTATCTTAAATACTTGCTTTACTGGAAAGACCCAGAATATGCCAAGTATCTAAAGTACCCT
CAGTGTTTACACATGTTAGAGCTGCTCCAATATGAACACTTCCGAAAGGAGCTGGTGAATGCTCAGTGTG
CGAAATTTATTGATGAACAGCAGATTCTACATTGGCAGCACTATTCCCGGAAGCGGATGCGCCTTCAGCA
AGCCTTGGCAGAGCAGCAACAGCAAAATAACACATCGGGAAAATGA

Translation (131 aa):
MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYP
QCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQALAEQQQQNNTSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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