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Report for CCDS24157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24157.1 Public Mus musculus 10 Tmtc2 23 108 98 CCDS HistoryNCBI Gene:278279Re-query CCDS DB by CCDS ID:24157.1Re-query CCDS DB by GeneID:278279See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061506.8 ENSMUSP00000061919.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061506.8Link to Ensembl Protein Viewer:ENSMUSP00000061919.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061506Re-query CCDS DB by Protein ID:ENSMUSP00000061919
Original member Current member NCBI NM_177368.4 NP_796342.2 Accepted alive Link to Nucleotide Sequence:NM_177368.4Link to Protein Sequence:NP_796342.2Re-query CCDS DB by Nucleotide ID:NM_177368Re-query CCDS DB by Protein ID:NP_796342Link to BLAST:NP_796342.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796342.2 836 Q56A06-1 836 100% 0 0

Chromosomal Locations for CCDS 24157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 105190095 105190274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105243589 105243652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105254795 105254909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105271499 105271580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105303594 105303715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105321396 105321474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105322862 105323046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105323552 105323637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105348435 105348549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105369950 105370778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105413217 105413787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105573667 105573749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGATTGCAGAGTTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGTGCTGATTTCT
GCTACGATGACAGCCGTGCTATCAAGACTAATCAAGACCTCCTGCCAGAAACCCCCTGGACACACATTTT
CTACAATGACTTTTGGGGGACTCTTCTAACCCACAGCGGTAGCCACAAGTCCTACCGGCCACTCTGCACT
CTCTCTTTTCGACTGAATCATGCCATTGGAGGGCTGAATCCCTGGAGCTATCACCTTGTCAATGTCCTGT
TGCATGCGGCTGTCACCGGCCTCTTCACACGCTTCTCCAAGGCCCTCCTTGGGGACGGATACTGGACCTT
CATGGCTGGCTTGATGTTTGCTTCACACCCCATCCACACGGAAGCGGTGGCGGGCATCGTGGGACGAGCA
GATGTGGGCGCTAGTCTCTTTTTTCTCCTGTCCCTGCTCTGCTACATTAAGCACTGTTCTACAAGAGGCT
ACTCTGCCAGAACTTGGGGCTGGTTCCTGGGGACTGGATTGTGCGCTGGATGCAGCATGCTTTGGAAAGA
GCAAGGAGTGACTGTCCTGGCAGTTTCAGCCGTTTATGACGTCTTTGTCTTCCACAGGCTAAAAATGAAG
CAGATCCTGCCTACCATTTACAAAAGGAAGAACTTGTCTCTTTTTCTCAGCATTAGCTTGTTAACATTCT
GGGGGACCTGCCTTTTGGGTGCCCGGCTGTACTGGATGGGCAATAAACCACCAAGCTTCTCCAACTCCGA
CAACCCCGCGGCTGACTCGGACAGCCTTTTGGCTCGCACGCTCACCTTCTTGTATTTACCTACCAAGAAC
CTCTGGCTATTGCTCTGCCCGGACACCCTGAGCTTTGATTGGTCCATGGATGCCGTGCCTCTTCTCAAAA
CAGTTTGTGATTGGAGAAATCTACACACTGTGGCCTTCTATTCTGGACTTCTCCTCCTTGCCTACTGTGG
TTTGAAGAACCCAAGTTTAGAAGGAGAGTGCAACGGGAAAGCCTTGACAAATGGCAAGCAGAATGCAAAT
GGCCATAGCTGCCACTCAGACGTGGAGTACCGGAACTCAGAAATGAAGCCCAGCTTTGCATCCAAAGTAG
AGAATGGAATTAAAAATTGTGTACCACAGAGAACTCAGCTCCCGTCCACGGAGAACATTGTTATTCTGTC
CTTATCTTTGTTGATAATACCTTTTATTCCTGCCACGAACCTGTTTTTCTATGTCGGCTTTGTAATCGCA
GAGCGAGTCTTATATATTCCCAGTATGGGCTTCTGCCTTCTGATCACAGTGGGTGCCAGAGCCCTGTATG
TCAAAGTACAAAAGAGGTTTCTCAAGAGCTTGGTTTTTTATGCTACTGCCACGTTAATTGTCTTCTACGG
AGTCAAGACTGCGATCAGGAACGGAGACTGGCAGAACGAGGAGATGCTGTATAGATCAGGGATCAAAGTG
AACCCAGCCAAAGCATGGGGTAACCTTGGAAATGTTCTGAAGAGTCAGAGTAAAATCTCTGAAGCTGAAA
GCGCCTACAGAAATGCTCTGTTCTACCGCAGCAACATGGCTGACATGCTGTATAATCTAGGGTTGCTGCT
CCAAGAGAACAGCAGGTTTGCAGAAGCTCTTCACTATTACAAACTGGCCATTGGGAGCAGGCCTACCCTG
GCTTCTGCCTATTTAAACACCGGCATTATTCTCATGAACCAAGGGAAGACAGAAGAAGCCCGGCGGACAT
TCCTCAAGTGTTCTGAGATTCCAGATGAGAACCTGAAGGATCCTCATGCACATAAGAGTTCTGTTACCAG
CTGTCTGTACAACCTCGGGAAACTCTATCACGAGCAAGGACGCTATGAGGAAGCCCTGAGTGTATATAGG
GAAGCAATTCAGAAGATGCCAAGGCACTTTGCCCCTCAGAGCCTGTACAACATGATGGGTGAAGCCTACA
TGAGACTGAGTAAGCTTCCTGAAGCTGAGCATTGGTACATGGAATCACTGAGATCCAAGACCGATCACAT
CCCTGCTCATCTCACCTACGGGAAGCTGCTCGCCTTAACAGGTCGTAAGAGTGAGGCTGAAAAGTTCTTC
TTGAAGGCTATTGAGCTGGATCCTACCAAAGGAAACTGTTACATGCACTATGGTCAGTTTCTCCTAGAAG
AGTCTCGCCTCACAGAAGCAGCAGAGATGGCAAAGAAAGCAGCTGAGCTGGACAACACAGAGTTCGATGT
CGTCTTCAATGCTGCCCATATGCTCAGACAAGCAAGCCTCAATGAAGCCGCTGAGAAGTATTACGATCTG
GCAGCAAGACTGAGACCTAATTACCCTGCTGCTCTCATGAACCTAGGGGCCATTCTGCATCTCAATGGGC
GACTGCAGAAGGCTGAGGCCAACTACCTGAGGGCCCTGCAACTCAAGCCAGATGATGTCATCACTCAGTC
TAATCTCCGCAAGCTGTGGAACATCATGGAAAAGCAAGGTTTGAAGACCTCCAAGACCTGA

Translation (836 aa):
MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCT
LSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTRFSKALLGDGYWTFMAGLMFASHPIHTEAVAGIVGRA
DVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGTGLCAGCSMLWKEQGVTVLAVSAVYDVFVFHRLKMK
QILPTIYKRKNLSLFLSISLLTFWGTCLLGARLYWMGNKPPSFSNSDNPAADSDSLLARTLTFLYLPTKN
LWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYSGLLLLAYCGLKNPSLEGECNGKALTNGKQNAN
GHSCHSDVEYRNSEMKPSFASKVENGIKNCVPQRTQLPSTENIVILSLSLLIIPFIPATNLFFYVGFVIA
ERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLVFYATATLIVFYGVKTAIRNGDWQNEEMLYRSGIKV
NPAKAWGNLGNVLKSQSKISEAESAYRNALFYRSNMADMLYNLGLLLQENSRFAEALHYYKLAIGSRPTL
ASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDPHAHKSSVTSCLYNLGKLYHEQGRYEEALSVYR
EAIQKMPRHFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFF
LKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDNTEFDVVFNAAHMLRQASLNEAAEKYYDL
AARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQGLKTSKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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