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Report for CCDS34771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34771.1 Public Homo sapiens 7 ARHGEF5 24 110 108 CCDS HistoryNCBI Gene:7984Re-query CCDS DB by CCDS ID:34771.1Re-query CCDS DB by GeneID:7984See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000056217.10 ENSP00000056217.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000056217.10Link to Ensembl Protein Viewer:ENSP00000056217.5Re-query CCDS DB by Nucleotide ID:ENST00000056217Re-query CCDS DB by Protein ID:ENSP00000056217
Original member Current member NCBI NM_005435.4 NP_005426.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005435.4Link to Protein Sequence:NP_005426.2Re-query CCDS DB by Nucleotide ID:NM_005435Re-query CCDS DB by Protein ID:NP_005426Link to BLAST:NP_005426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005426.2 1597 Q12774-1 1597 100% 0 0

Chromosomal Locations for CCDS 34771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144362670 144365823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144366355 144366412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144366846 144366910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144367102 144367355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144371161 144371321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144371877 144372029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144372299 144372428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144372683 144372757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144373195 144373284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144374732 144374889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144375514 144375675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144377120 144377190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144378762 144378866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144379899 144380056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4794 nt):
ATGGAGGCTGAGGAGGCCCAGCGTGGAGCCTCTCCTCCCATCTCTGCCATAGAGGAATTCAGCATTATCC
CTGAGGCTCCCATGAGGAGCAGCCAGGTCTCTGCCTTGGGGCTTGAAGCTCAAGAAGATGAGGACCCATC
CTATAAGTGGAGAGAGGAACACAGACTCTCAGCAACTCAGCAGAGTGAGTTAAGGGATGTGTGTGACTAT
GCGATTGAGACGATGCCCTCTTTTCCCAAGGAAGGTTCTGCAGATGTGGAGCCCAATCAGGAAAGCCTTG
TGGCTGAGGCCTGTGACACTCCGGAACACTGGGAGGCAGTACCCCAGAGCCTAGCAGGCCGACAAGCAAG
GACTCTAGCTCCCCCAGAGCTCTGGGCCTGCCCCATTCAGAGTGAGCATCTAGACATGGCCCCATTTTCC
AGTGACCTGGGAAGCGAAGAAGAGGAGGTGGAATTTTGGCCAGGACTTACTTCTTTGACATTGGGATCTG
GACAGGCAGAAGAAGAAGAGGAAACCTCTTCAGATAACTCTGGTCAGACCAGATATTATTCTCCCTGCGA
AGAGCATCCTGCAGAGACCAACCAGAATGAAGGCTCTGAAAGTGGGACTATCAGGCAGGGGGAAGAGCTG
CCACCTGAGGAGCTGCAGGAAAGTCAAGGGCTCTTGCATCCCCAGGAGGTCCAAGTTCTGGAGGAGCAGG
GACAGCAGGAAGCAGGATTTCGGGGGGAAGGAACTCTGAGGGAGGATGTTTGTGCCGATGGGCTATTAGG
GGAGGAACAGATGATAGAGCAGGTTAATGATGAAAAGGGAGAACAGAAGCAAAAACAGGAACAGGTACAA
GATGTGATGCTTGGGAGACAAGGAGAAAGAATGGGGCTCACTGGGGAGCCAGAGGGTCTGAATGACGGTG
AGTGGGAGCAGGAGGATATGGAGAGGAAGGCTCAGGGTCAGGGAGGTCCAGAACAGGGAGAAGAGAGGAA
GAGGGAGCTGCAGGTGCCAGAAGAGAATAGGGCGGACTCTCAGGACGAAAAGAGTCAAACCTTTTTGGGA
AAATCAGAGGAAGTAACTGGAAAGCAAGAAGATCATGGTATAAAGGAGAAAGGGGTGCCAGTCAGCGGGC
AGGAGGCGAAAGAGCCAGAGAGTTGGGATGGGGGCAGGCTGGGGGCAGTGGGAAGAGCGAGGAGCAGGGA
AGAGGAGAATGAGCATCATGGGCCTTCAATGCCCGCTCTGATAGCCCCTGAGGACTCTCCTCACTGTGAC
CTGTTTCCAGGTGCCTCATATCTCATGACTCAGATTCCCGGGACTCAGACAGAGTCCAGGGCTGAGGAAC
TGTCCCCCGCAGCTCTGTCTCCCTCGCTAGAGCCCATCAGGTGCTCTCACCAGCCCATTTCTCTACTGGG
CTCCTTTTTGACTGAGGAGTCACCTGACAAGGAAATAGATCAAAACAGCCAGCAAGAGGAATCCAGGCTG
AGGAAGGGAACAGTGTCCAGCCAAGGGACTGAGGTGGTCTTTGCCAGTGCATCTGTGACTCCTCCAAGGA
CACCAGATTCAGCTCCTCCCAGTCCTGCTGAAGCCTACCCCATCACACCTGCCTCGGTATCTGCCAGGCC
CCCAGTTGCCTTTCCCAGGAGGGAAACCTCTTGTGCTGCACGTGCTCCAGAAACTGCCAGTGCCCCTCTC
TCAATGGATGACCCATCTCCCTGTGGGACTTCTGAGATGTGCCCGGCTGCCCTCTATGGCTTCCCCTCCA
CCGGGACCAGCCCTCCGAGGCCCCCAGCCAACTCCACAGGCACCGTCCAGCACTTACGGAGTGACTCCTT
CCCTGGTTCTCACAGGACAGAGCAGACTCCAGACCTGGTGGGAATGTTGCTTTCCTACTCCCACTCAGAG
CTGCCCCAGAGGCCCCCCAAACCTGCCATCTACAGCTCTGTGACCCCAAGAAGGGACAGAAGGAGTGGTA
GGGACTACAGCACCGTTTCAGCATCCCCTACTGCCTTATCCACGCTGAAGCAGGACTCTCAAGAATCCAT
CTCAAATCTAGAGAGACCCAGCAGTCCTCCCAGCATCCAGCCCTGGGTCTCCCCACATAATCCAGCCTTT
GCCACAGAGTCTCCCGCCTACGGTTCTTCCCCATCCTTTGTCTCCATGGAGGATGTGAGGATCCACGAAC
CTCTGCCCCCTCCTCCCCCACAGAGGAGGGACACCCATCCCTCCGTGGTGGAGACAGATGGCCATGCTCG
TGTAGTGGTTCCCACGCTGAAGCAGCATAGCCACCCTCCTCCATTGGCCCTAGGTTCAGGGCTGCATGCC
CCCCATAAAGGCCCACTTCCCCAAGCCTCTGACCCCGCTGTGGCCAGGCAGCACCGACCTCTGCCATCTA
CCCCAGACAGCTCCCACCATGCTCAGGCCACCCCCAGGTGGAGATACAACAAGCCGCTACCCCCTACCCC
TGATTTGCCGCAGCCCCACCTTCCTCCCATTTCTGCTCCTGGTAGCTCAAGGATCTACAGGCCTCTACCC
CCACTACCCATCATAGACCCTCCCACCGAACCACCCCCATTGCCCCCAAAGTCCAGGGGGAGGAGCAGGA
GCACTCGGGGAGGACATATGAACTCAGGGGGTCATGCCAAAACAAGACCTGCTTGTCAAGACTGGACAGT
CCCCCTCCCTGCCTCTGCTGGACGCACCTCCTGGCCCCCGGCCACAGCTAGATCAACAGAGTCTTTCACT
TCCACCAGCAGGAGTAAGAGCGAAGTGTCCCCTGGCATGGCTTTCAGCAACATGACAAACTTCCTATGCC
CCTCTTCCCCTACCACTCCCTGGACTCCGGAGCTCCAGGGACCCACCTCTAAGGATGAAGCAGGGGTCTC
AGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAGAAGGACAACCCCTCAGCAAGGAGCCAGTGGCCCA
GGGAGGTCACCTGTGGGCCAAGCAAGGCAGCCAGAAAAACCCAGCCATCTGCACCTGGAGAAGGCGTCCA
GCTGGCCCCACAGGCGGGACTCAGGGAGGCCACCAGGGGACAGCAGTGGACAGGCTGTGGCTCCTAGTGA
GGGGGCCAACAAGCACAAGGGCTGGAGCCGGCAGGGCCTGCGCAGACCTTCCATCTTGCCTGAGGGCTCT
TCAGATTCAAGAGGTCCAGCCGTGGAGAAACATCCGGGACCCTCAGACACTGTTGTTTTTCGGGAGAAAA
AACCAAAGGAGGTGATGGGAGGCTTTTCAAGACGCTGCTCCAAACTCATCAACTCCTCCCAGCTGCTTTA
CCAGGAGTATAGTGATGTTGTCCTGAATAAGGAGATCCAGAGCCAGCAGCGGCTGGAGAGCCTGTCCGAG
ACACCCGGGCCTAGCTCTCCGCGGCAGCCTCGGAAGGCCCTGGTCTCCTCCGAGTCGTACCTGCAGCGGC
TCTCCATGGCCTCCAGCGGCTCCCTCTGGCAGGAAATCCCCGTGGTGCGCAACAGCACCGTGCTGCTCTC
CATGACCCATGAAGACCAAAAGCTGCAAGAGGTCAAATTTGAGCTGATTGTGTCAGAGGCCTCCTACCTG
CGCAGTCTAAACATAGCTGTGGATCATTTCCAACTTTCAACTTCACTCCGGGCCACACTTTCCAACCAGG
AGCACCAATGGCTCTTCTCTCGTTTACAGGATGTGCGAGACGTCAGCGCCACGTTCCTTTCAGACCTGGA
AGAGAACTTTGAGAACAATATCTTCTCCTTCCAAGTATGTGACGTAGTCCTGAACCACGCCCCAGACTTC
CGCCGGGTCTACCTGCCTTATGTCACCAACCAGACCTATCAGGAACGCACCTTCCAGAGCCTGATGAATA
GCAACAGCAATTTCCGGGAGGTCTTGGAGAAGCTGGAGAGCGACCCCGTCTGCCAGCGCCTTTCCCTCAA
GTCCTTTCTGATTCTGCCCTTCCAACGCATCACCCGCCTCAAACTGCTGCTCCAGAACATTCTGAAGAGA
ACACAGCCTGGCTCCTCGGAGGAGGCAGAGGCCACGAAGGCACACCACGCCCTGGAGCAGCTGATCCGGG
ACTGCAATAACAATGTCCAGAGTATGCGACGGACAGAGGAACTAATCTACCTGAGCCAGAAGATTGAGTT
TGAGTGCAAAATATTCCCGCTCATTTCTCAGTCACGCTGGCTGGTGAAAAGTGGGGAGCTGACAGCCTTG
GAGTTCAGTGCTTCCCCAGGGCTACGAAGGAAGCTGAACACGCGTCCAGTCCACCTGCACCTCTTCAATG
ACTGTCTGCTGCTGTCTCGGCCCCGAGAGGGTAGCCGATTCCTGGTATTTGACCATGCTCCCTTCTCCTC
CATTCGGGGGGAAAAGTGTGAAATGAAGCTACATGGACCTCACAAAAACCTGTTCCGACTCTTTCTGCGG
CAGAACACTCAGGGCGCCCAGGCCGAGTTCCTCTTCCGCACGGAGACTCAAAGTGAAAAGCTTCGGTGGA
TCTCAGCCTTGGCCATGCCAAGAGAGGAGTTGGACCTTCTGGAGTGTTACAACTCCCCCCAGGTACAGTG
CCTTCGAGCCTACAAGCCCCGAGAGAATGATGAATTGGCACTGGAGAAAGCCGACGTGGTGATGGTGACT
CAGCAGAGCAGTGACGGCTGGCTGGAGGGCGTGAGGCTCTCAGACGGGGAGCGAGGCTGGTTTCCTGTGC
AGCAGGTGGAGTTCATTTCCAACCCAGAGGTCCGTGCACAGAACCTGAAGGAAGCTCATCGAGTCAAGAC
TGCCAAACTACAGCTGGTGGAACAGCAAGCCTAA

Translation (1597 aa):
MEAEEAQRGASPPISAIEEFSIIPEAPMRSSQVSALGLEAQEDEDPSYKWREEHRLSATQQSELRDVCDY
AIETMPSFPKEGSADVEPNQESLVAEACDTPEHWEAVPQSLAGRQARTLAPPELWACPIQSEHLDMAPFS
SDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQTRYYSPCEEHPAETNQNEGSESGTIRQGEEL
PPEELQESQGLLHPQEVQVLEEQGQQEAGFRGEGTLREDVCADGLLGEEQMIEQVNDEKGEQKQKQEQVQ
DVMLGRQGERMGLTGEPEGLNDGEWEQEDMERKAQGQGGPEQGEERKRELQVPEENRADSQDEKSQTFLG
KSEEVTGKQEDHGIKEKGVPVSGQEAKEPESWDGGRLGAVGRARSREEENEHHGPSMPALIAPEDSPHCD
LFPGASYLMTQIPGTQTESRAEELSPAALSPSLEPIRCSHQPISLLGSFLTEESPDKEIDQNSQQEESRL
RKGTVSSQGTEVVFASASVTPPRTPDSAPPSPAEAYPITPASVSARPPVAFPRRETSCAARAPETASAPL
SMDDPSPCGTSEMCPAALYGFPSTGTSPPRPPANSTGTVQHLRSDSFPGSHRTEQTPDLVGMLLSYSHSE
LPQRPPKPAIYSSVTPRRDRRSGRDYSTVSASPTALSTLKQDSQESISNLERPSSPPSIQPWVSPHNPAF
ATESPAYGSSPSFVSMEDVRIHEPLPPPPPQRRDTHPSVVETDGHARVVVPTLKQHSHPPPLALGSGLHA
PHKGPLPQASDPAVARQHRPLPSTPDSSHHAQATPRWRYNKPLPPTPDLPQPHLPPISAPGSSRIYRPLP
PLPIIDPPTEPPPLPPKSRGRSRSTRGGHMNSGGHAKTRPACQDWTVPLPASAGRTSWPPATARSTESFT
STSRSKSEVSPGMAFSNMTNFLCPSSPTTPWTPELQGPTSKDEAGVSEHPEAPAREPLRRTTPQQGASGP
GRSPVGQARQPEKPSHLHLEKASSWPHRRDSGRPPGDSSGQAVAPSEGANKHKGWSRQGLRRPSILPEGS
SDSRGPAVEKHPGPSDTVVFREKKPKEVMGGFSRRCSKLINSSQLLYQEYSDVVLNKEIQSQQRLESLSE
TPGPSSPRQPRKALVSSESYLQRLSMASSGSLWQEIPVVRNSTVLLSMTHEDQKLQEVKFELIVSEASYL
RSLNIAVDHFQLSTSLRATLSNQEHQWLFSRLQDVRDVSATFLSDLEENFENNIFSFQVCDVVLNHAPDF
RRVYLPYVTNQTYQERTFQSLMNSNSNFREVLEKLESDPVCQRLSLKSFLILPFQRITRLKLLLQNILKR
TQPGSSEEAEATKAHHALEQLIRDCNNNVQSMRRTEELIYLSQKIEFECKIFPLISQSRWLVKSGELTAL
EFSASPGLRRKLNTRPVHLHLFNDCLLLSRPREGSRFLVFDHAPFSSIRGEKCEMKLHGPHKNLFRLFLR
QNTQGAQAEFLFRTETQSEKLRWISALAMPREELDLLECYNSPQVQCLRAYKPRENDELALEKADVVMVT
QQSSDGWLEGVRLSDGERGWFPVQQVEFISNPEVRAQNLKEAHRVKTAKLQLVEQQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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