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Report for CCDS44029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44029.1 Public Homo sapiens Y BPY2B 24 110 108 CCDS HistoryNCBI Gene:442867Re-query CCDS DB by CCDS ID:44029.1Re-query CCDS DB by GeneID:442867See the combined annotation on chromosome Y in Sequence Viewer

Public Note for CCDS 44029.1
This CCDS ID represents the protein described in PMIDs: 12724276 and 12207887. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 12724276. Three nearly identical copies of this gene exist on chromosome Y; two copies are part of a palindromic region. This record represents the more centromeric copy within the palindrome.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 44029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382392.5 ENSP00000371829.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382392.5Link to Ensembl Protein Viewer:ENSP00000371829.1Re-query CCDS DB by Nucleotide ID:ENST00000382392Re-query CCDS DB by Protein ID:ENSP00000371829
Original member Current member EBI ENST00000615850.1 ENSP00000480184.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615850.1Link to Ensembl Protein Viewer:ENSP00000480184.1Re-query CCDS DB by Nucleotide ID:ENST00000615850Re-query CCDS DB by Protein ID:ENSP00000480184
Original member Current member NCBI NM_001002760.1 NP_001002760.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002760.1Link to Protein Sequence:NP_001002760.1Re-query CCDS DB by Nucleotide ID:NM_001002760Re-query CCDS DB by Protein ID:NP_001002760Link to BLAST:NP_001002760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002760.1 106 O14599 106 100% 0 0

Chromosomal Locations for CCDS 44029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 24626085 24626162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 24628222 24628339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 24631194 24631299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 24631992 24632010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGATGACGCTTGTCCCCAGAGCCAGGACACGTGCAGGACAGGATCATTACTCTCATCCCTGCCCCAGAT
TTTCACAGGTGCTGCTTACAGAGGGCATCATGACATATTGCTTGACAAAGAACCTAAGTGATGTTAATAT
TCTGCATAGGTTGCTAAAAAATGGGAATGTGAGAAATACCTTGCTTCAGTCCAAAGTGGGCTTGCTGACA
TATTATGTGAAACTGTACCCGGGTGAAGTGACTCTTCTGACTAGGCCCAGCATACAAATGAGATTATGCT
GTATCACTGGCTCAGTGTCGAGGCCCAGATCACAGAAGTAA

Translation (106 aa):
MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNTLLQSKVGLLT
YYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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