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Report for CCDS27339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27339.1 Public Mus musculus 14 Hs6st3 23 108 98 CCDS HistoryNCBI Gene:50787Re-query CCDS DB by CCDS ID:27339.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065904.4 ENSMUSP00000070394.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065904.4Link to Ensembl Protein Viewer:ENSMUSP00000070394.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065904Re-query CCDS DB by Protein ID:ENSMUSP00000070394
Original member Current member NCBI NM_015820.3 NP_056635.2 Accepted alive Link to Nucleotide Sequence:NM_015820.3Link to Protein Sequence:NP_056635.2Re-query CCDS DB by Nucleotide ID:NM_015820Re-query CCDS DB by Protein ID:NP_056635Link to BLAST:NP_056635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056635.2 470 Q9QYK4 470 100% 0 0

Chromosomal Locations for CCDS 27339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 119138415 119139118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 119868886 119869594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGATGAAAGGTTCAACAAGTGGCTGCTGACGCCGGTGCTCACTCTCCTCTTCGTGGTCATCATGTACC
AGTACGTGTCCCCTTCCTGCACCAGCTCATGCACCAACTTCGGGGAGCAGCTCCGCTCCGGGGAGGCCCG
CCCGCCCGCTGTCCCGAGTCCTGCCCGACGGGCACAAGCACCCCTTGATGAGTGGGAGCGGCGGCCCCAG
CTGCCACCGCCACCCCGGGGACCGCCCGAGGGGTCTCGTGGGGTCGCGGCTCCCGAGGATGAGGATGAGG
ATCCCGGGGACCCGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGCCGGACCCCGAGGCGCCCGAAAACGG
CTCCCTGCCCCGGTTCGTGCCTCGATTCAACTTCACCCTCAAGGACCTGACCCGCTTCGTGGACTTCAAC
ATCAAAGGGCGGGATGTGATCGTGTTCCTGCACATCCAGAAGACCGGGGGCACCACGTTCGGCCGGCACC
TGGTGAAGAACATTCGTCTGGAGCAGCCATGCAGCTGCAAAGCTGGCCAGAAAAAGTGCACCTGCCACCG
GCCGGGCAAGAAGGAGACCTGGCTCTTCTCCCGCTTCTCCACCGGCTGGAGCTGCGGGCTGCATGCCGAC
TGGACCGAGCTCACCAACTGCGTGCCGGCCATCATGGAGAAGAAGGATTGTCCCCGCAACCACAGCCACA
CCAGGAATTTCTACTACATCACGATGTTGCGGGACCCAGTGTCACGTTACCTGAGCGAATGGAAGCATGT
CCAGAGAGGGGCCACATGGAAAACCTCTCTCCATATGTGCGACGGAAGGAGCCCCACACCAGATGAGCTG
CCTACCTGCTATCCTGGGGATGACTGGTCTGGGGTCAGCTTGCGGGAGTTCATGGATTGTAGCTACAACC
TGGCCAACAACCGCCAAGTGCGCATGCTGGCCGACCTCAGCCTGGTGGGCTGCTACAACTTGACTTTCAT
GAATGAGAGCGAGCGGAACACCATCCTGCTGCAGAGCGCTAAGAACAATCTGAAGAATATGGCCTTCTTT
GGGCTCACTGAATTCCAGAGGAAGACACAGTTTCTCTTTGAGAGGACATTCAACCTGAAGTTCATCTCTC
CTTTCACACAGTTCAACATCACACGGGCATCCAACGTGGACATCAATGATGGAGCCCGTCAGCACATCGA
GGAGTTGAATTTCCTGGACATGCAGCTTTATGAGTATGCGAAGGATCTCTTCCAGCAACGCTACCATCAC
ACCAAACAGCTAGAGCACCAGAGGGACCGCCAAAAGAGGCGCGAGGAGCGGAGGCTGCAGCGAGAGCACA
GAGCACACCGGTGGCCCAAAGAGGATAGGGCCATGGAGGGGACTGTCACTGAGGACTACAACAGCCAAGT
GGTCAGATGGTGA

Translation (470 aa):
MDERFNKWLLTPVLTLLFVVIMYQYVSPSCTSSCTNFGEQLRSGEARPPAVPSPARRAQAPLDEWERRPQ
LPPPPRGPPEGSRGVAAPEDEDEDPGDPEEEEEEEEEEPDPEAPENGSLPRFVPRFNFTLKDLTRFVDFN
IKGRDVIVFLHIQKTGGTTFGRHLVKNIRLEQPCSCKAGQKKCTCHRPGKKETWLFSRFSTGWSCGLHAD
WTELTNCVPAIMEKKDCPRNHSHTRNFYYITMLRDPVSRYLSEWKHVQRGATWKTSLHMCDGRSPTPDEL
PTCYPGDDWSGVSLREFMDCSYNLANNRQVRMLADLSLVGCYNLTFMNESERNTILLQSAKNNLKNMAFF
GLTEFQRKTQFLFERTFNLKFISPFTQFNITRASNVDINDGARQHIEELNFLDMQLYEYAKDLFQQRYHH
TKQLEHQRDRQKRREERRLQREHRAHRWPKEDRAMEGTVTEDYNSQVVRW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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